G1896038


Basic Information

Item Value
gene id G1896038
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 5874613 ~ 5966164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2168822
AGACGTGGAGGGGAAGCCGCCACTTGGCGTCGTCCACAAGCCGGCGGCCTGGGCTCTCATCcgtgtatgtgtatgtgggtAGCCTCCACTCTGTTCTATGTTGACAGCTTTGGCTGGACTCATGTTGACAGCTTTTACTTTGGCTGGACTCAAGCCTGCCCGACGTTAAGACTCCTCTCCGCCTGTCATTGGCTCAGCTCGGGCCACCTGCCAATCTGCCTTTTTTATTTGagccctctctcctgtccctcaaAGTCGAAAGATCCCGCTCTCTAACGCACGGCGTCTGGCGATTAGCGTCCAACTTTGCACTTCTGTCCCCACACGGATGGATCCGATGCTGCCCAGGGTGAAACAGAGACGGCGTAGGGTTGCTCTATAGCAACGCCAGTCAGGCAGCGCAGGGAAATGTCTAAGCGCGAAAAGACGcacacccagacaggagacaagcTTCAGGTACCACCACCGGCCACAGGTATAGCAAACACACACTGGAAAACGCATAGGAATAACAAAGATATAAGAGTGGAAAGTTACTACTATAAGGGGGTTTTAGTAAATCAAGCTACTACTATAAGGGGGTTTTAGTCAATCGATTCGGTTTCATCTGTGCTGGGTAGCAATGCCTCTTCGCACCTCGGTTGCACTGCAAAATGTCCTTGACTAACATGCTGATCACATTTATCCAATGGTTCCTGGCACAACGTTCTTTGAAACGTTGTGTTGTCCGTTCCCCAAAATGTCAAAGAAAGCATACAATTGTTAGAAACACACTCCGGTGAATTGAAACGGACTGTACCGTTATTCAAAAACAATCACTCATGTATTTTGGAGAAAAATTATGCAGTAACCTTGAACTTTGTCCAAAATACAAGGTGCAGGCGTGTCCAGCGTTTCTCCAAAATCCATAGCTGGGTTCCTACAACCTCCTACAAAGCCaacactttaaaaaaatacatcCAGTGAAAGTAAAACAACCTTTCAAGCGAATGAATGTCCTATATCAATGAATTACATCGCTGTCACCTGATATCCGTCTCAATGAGGTTATTGGGCAAATGACCGTGAATAATTTACACAACAATTCTGTGGATCACCCTAGGTGAGCGAGCGGGTGGGGTGAGATGCAATCTCAGCTCCGGAATTGCAGCGGCACGCCCAGTCCGATGTCTTTCCTTCTCATTCCCACCCGCGAGTACTTTCCGCGTCTCTcct

Function

NR:

description
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2168822 True 1215 lncRNA 0.48 2 5874613 5966164

Neighbor

gene id symbol gene type direction distance location
LOC110503579 LOC106612719 coding downstream 348853 5520441 ~ 5525760 (-)
LOC110503580 LOC106612720 coding downstream 355841 5514730 ~ 5518772 (-)
LOC110503446 LOC106605018 coding downstream 362576 5511049 ~ 5512037 (-)
LOC110503578 NA coding downstream 364221 5503177 ~ 5510392 (-)
LOC110503577 LOC106612723 coding downstream 380183 5490835 ~ 5494430 (-)
LOC110503586 LOC100380764 coding upstream 182025 6148189 ~ 6157661 (-)
LOC110503585 LOC106612713 coding upstream 193547 6159711 ~ 6175088 (-)
LOC118944082 NA coding upstream 216246 6181377 ~ 6231808 (-)
LOC118944097 NA coding upstream 302754 6264040 ~ 6317522 (-)
LOC110503590 LOC106612705 coding upstream 405906 6371958 ~ 6472758 (-)
G1896031 NA non-coding downstream 4909 5869453 ~ 5869704 (-)
G1896028 NA non-coding downstream 14015 5860365 ~ 5860598 (-)
G1896021 NA non-coding downstream 22788 5851590 ~ 5851825 (-)
G1895833 NA non-coding downstream 29274 5845061 ~ 5845339 (-)
G1895801 NA non-coding downstream 54327 5820057 ~ 5820286 (-)
G1896162 NA non-coding upstream 79429 6045593 ~ 6048631 (-)
G1896182 LOC106612716 non-coding upstream 107981 6074145 ~ 6076485 (-)
G1896213 NA non-coding upstream 142756 6108920 ~ 6109127 (-)
G1896296 NA non-coding upstream 210104 6176268 ~ 6176480 (-)
G1896030 NA other downstream 5395 5868896 ~ 5869218 (-)
G1894611 NA other downstream 1520677 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 1580135 4289886 ~ 4294714 (-)
egln2 egln2 other downstream 1799038 4053778 ~ 4075685 (-)
G1893790 LOC106612372 other downstream 1959765 3881288 ~ 3914848 (-)
G1899875 NA other upstream 2080615 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 3604707 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 4039208 10005372 ~ 10012354 (-)

Expression


Co-expression Network