G1896473


Basic Information

Item Value
gene id G1896473
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6483938 ~ 6484429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2169296
TGCCAGACATCTAATTGCTGTTGGATGTTGTCTGCTTGACGTTAACCTTCATTTCATAATTGTCGTATTTGACTCGCGTCTGTCTGTAGGATCATTTTATGCGTCTCCCACGAACACGACTCCATGAGCATCGACCGACGAGGGTTTATTTAGGCTACTATACATACATTTCAAGGTGGAAAAGGTCCCCTATACCTGCATCGTAGTCAAAAGGCTGCTTTAAAAATAAAATCATATTTTTCTGTGAGTCTCTTTGCTCATCTTATTCGAGCCAGTCAGCAGACGCATCCTTACCGCAGTAGCCTACAGTGCGTGCACCCAGCAACGAGAATGTCGGCGGCAAGCTACTTGCATCCCACTCACACGTAGCCTACGCAGCATCGCATCATCACTGTAGCCCACTCTTGAGGTATTCCGCGTCTCGTTCTAGTCGGAACTAATGCAGTATCATgaataactacaaccagttagaGCAAGTCGCAAACTCGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2169296 True 492 lncRNA 0.46 1 6483938 6484429

Neighbor

gene id symbol gene type direction distance location
sertad3 LOC106612704 coding upstream 20110 6461766 ~ 6463828 (+)
LOC110503591 LOC106612705 coding upstream 23068 6457810 ~ 6460870 (+)
LOC110503588 LOC106612710 coding upstream 114080 6363057 ~ 6369858 (+)
LOC110503587 LOC106612711 coding upstream 127441 6285718 ~ 6356497 (+)
LOC118944026 NA coding upstream 314145 6156840 ~ 6169793 (+)
LOC110503600 LOC106612698 coding downstream 117551 6601980 ~ 6604021 (+)
LOC110503605 NA coding downstream 310716 6795145 ~ 6818270 (+)
LOC110503606 LOC106612691 coding downstream 374607 6859036 ~ 6896546 (+)
LOC110503608 LOC106612689 coding downstream 430914 6915343 ~ 6932895 (+)
LOC110503308 LOC106612688 coding downstream 463449 6947878 ~ 6953071 (+)
G1896403 shkbp1 non-coding upstream 106715 6376278 ~ 6377223 (+)
G1896402 LOC106612709 non-coding upstream 107843 6375825 ~ 6376095 (+)
G1896363 NA non-coding upstream 109881 6371945 ~ 6374057 (+)
G1896364 NA non-coding upstream 113605 6370139 ~ 6370333 (+)
G1896397 NA non-coding upstream 126452 6357271 ~ 6357486 (+)
G1896476 NA non-coding downstream 1318 6485747 ~ 6486102 (+)
G1896478 NA non-coding downstream 2368 6486797 ~ 6487106 (+)
G1896492 NA non-coding downstream 35808 6520237 ~ 6520540 (+)
G1896493 NA non-coding downstream 36454 6520883 ~ 6521224 (+)
G1896494 NA non-coding downstream 36896 6521325 ~ 6522638 (+)
G1895266 LOC106612719 other upstream 961073 5521415 ~ 5522865 (+)
bl1s3 bl1s3 other upstream 963906 5518991 ~ 5520163 (+)
G1894083 LOC106612398 other upstream 2038962 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 2142534 4336602 ~ 4341404 (+)
G1893604 NA other upstream 2193340 4289908 ~ 4290598 (+)
G1896894 NA other downstream 455987 6940416 ~ 6941556 (+)
G1896931 NA other downstream 533366 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 832523 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 1591777 8076117 ~ 8080686 (+)
G1898300 NA other downstream 2872622 9357051 ~ 9359164 (+)

Expression


Co-expression Network