G1896493


Basic Information

Item Value
gene id G1896493
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6520883 ~ 6521224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2169317
cagagacaaactgatatctttccgacagataagatctaaaccaggccataacttgtccgtgtagaccaatttgggtttccaatctctccaaaagaatgtggtgatcgatggtatcaaaagcagcactaaggtctaggagcacgaggacagatgcagagcctcggtccgatgccattaaaatgtcatttaccaccttcacaagtgccgtctcagtgctatgatggggtctaaaaccagactgaagcatttcgtatacattgtttgtcttcaggaaggcagtgagttgttgcgcaacagccttttctaaattttttgagaggaatggaagattcgatataggcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2169317 True 342 lncRNA 0.44 1 6520883 6521224

Neighbor

gene id symbol gene type direction distance location
sertad3 LOC106612704 coding upstream 57055 6461766 ~ 6463828 (+)
LOC110503591 LOC106612705 coding upstream 60013 6457810 ~ 6460870 (+)
LOC110503588 LOC106612710 coding upstream 151025 6363057 ~ 6369858 (+)
LOC110503587 LOC106612711 coding upstream 164386 6285718 ~ 6356497 (+)
LOC118944026 NA coding upstream 351090 6156840 ~ 6169793 (+)
LOC110503600 LOC106612698 coding downstream 80756 6601980 ~ 6604021 (+)
LOC110503605 NA coding downstream 273921 6795145 ~ 6818270 (+)
LOC110503606 LOC106612691 coding downstream 337812 6859036 ~ 6896546 (+)
LOC110503608 LOC106612689 coding downstream 394119 6915343 ~ 6932895 (+)
LOC110503308 LOC106612688 coding downstream 426654 6947878 ~ 6953071 (+)
G1896492 NA non-coding upstream 343 6520237 ~ 6520540 (+)
G1896478 NA non-coding upstream 33777 6486797 ~ 6487106 (+)
G1896476 NA non-coding upstream 34781 6485747 ~ 6486102 (+)
G1896473 NA non-coding upstream 36454 6483938 ~ 6484429 (+)
G1896403 shkbp1 non-coding upstream 143660 6376278 ~ 6377223 (+)
G1896494 NA non-coding downstream 101 6521325 ~ 6522638 (+)
G1896698 NA non-coding downstream 27465 6548689 ~ 6549306 (+)
G1896718 NA non-coding downstream 73786 6595010 ~ 6595246 (+)
G1896720 NA non-coding downstream 75447 6596671 ~ 6599586 (+)
G1896721 NA non-coding downstream 83365 6604589 ~ 6604790 (+)
G1895266 LOC106612719 other upstream 998018 5521415 ~ 5522865 (+)
bl1s3 bl1s3 other upstream 1000851 5518991 ~ 5520163 (+)
G1894083 LOC106612398 other upstream 2075907 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 2179479 4336602 ~ 4341404 (+)
G1893604 NA other upstream 2230285 4289908 ~ 4290598 (+)
G1896894 NA other downstream 419192 6940416 ~ 6941556 (+)
G1896931 NA other downstream 496571 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 795728 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 1554982 8076117 ~ 8080686 (+)
G1898300 NA other downstream 2835827 9357051 ~ 9359164 (+)

Expression


Co-expression Network