G1896494


Basic Information

Item Value
gene id G1896494
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6521325 ~ 6522638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2169318
gccgtttattatgttcaacataggagggccaagcacaggaagcagctctttcagtagtttagttggaatagggtccagtatgcagcttgaaggtttagaggccatgattattttcatcattgtgtcaagagatatagtactaaaacacttgagtgtctctcttgatcctaggtcctggcagagttgtgcagactcaggacaactgagctttgaaggaatacgcagatttaaggaagagtccgtaatttgctttctaataatcataatcttttcctcaaagaagttcatgaatttatcactgctaaagtgaaagtcatcctctcttggggaatgctgctttttagttagctttgcgacagtatcaaaaaggaatttcggattgttcttattttcctcaattaagttagaaaaataggatgatcgagcagcagtaagggctcttcggtactgcacagtactgtctttccaagctagtcggaagacttccagtttggtgtggcgccatttccgttccaattttctggaagcttgcttcagagctcgggtattttctgtgtaccagggagctagtttcttatgagaaatgtttttagtttttaggggtgcaactgcatctagggtattgcgcaaggttaagttgagttcctcagttaggtggttaactgatttttgtcctctggtgtccttgggtagacagagggaatctggaaggacatcaaggaatctttgtgttgtctgtgaatttatagcacgacttttgatgatccttggttggggtttgagcagattatttgttgcaattgcaaacgtaataaaatggtggtccgatagtccaggattatgaggaaaaacattaagatccacaacatttattccatgggacaaaactaggtccagcgtatgactgtgacagtgagtgggtccagagacatgttggacaaaacccactgagtcgatgatggctccgaaagccttttggagtgggtctgtggacttttccatgtgaatattaaagtcaccaaagattagaatattatccgctatgactacaaggtccgataggaattcagggaactcagtgaggaacgctgtatatggcccaggaggcctgtaaacagtagctataaaaagtgattgagtaggctgcatagatttcatgactagaagctcaaaagacgaaaacgtcaattttttttttgtaaattgaaatttgctatcgtaaatgttagcaacacctccgcctttgcgggatgcacgggggatatggtcactagtgtagccaggaggtgaggcctcatttaacacagtaaattc

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2169318 True 1314 lncRNA 0.42 1 6521325 6522638

Neighbor

gene id symbol gene type direction distance location
sertad3 LOC106612704 coding upstream 57497 6461766 ~ 6463828 (+)
LOC110503591 LOC106612705 coding upstream 60455 6457810 ~ 6460870 (+)
LOC110503588 LOC106612710 coding upstream 151467 6363057 ~ 6369858 (+)
LOC110503587 LOC106612711 coding upstream 164828 6285718 ~ 6356497 (+)
LOC118944026 NA coding upstream 351532 6156840 ~ 6169793 (+)
LOC110503600 LOC106612698 coding downstream 79342 6601980 ~ 6604021 (+)
LOC110503605 NA coding downstream 272507 6795145 ~ 6818270 (+)
LOC110503606 LOC106612691 coding downstream 336398 6859036 ~ 6896546 (+)
LOC110503608 LOC106612689 coding downstream 392705 6915343 ~ 6932895 (+)
LOC110503308 LOC106612688 coding downstream 425240 6947878 ~ 6953071 (+)
G1896493 NA non-coding upstream 101 6520883 ~ 6521224 (+)
G1896492 NA non-coding upstream 785 6520237 ~ 6520540 (+)
G1896478 NA non-coding upstream 34219 6486797 ~ 6487106 (+)
G1896476 NA non-coding upstream 35223 6485747 ~ 6486102 (+)
G1896473 NA non-coding upstream 36896 6483938 ~ 6484429 (+)
G1896698 NA non-coding downstream 26051 6548689 ~ 6549306 (+)
G1896718 NA non-coding downstream 72372 6595010 ~ 6595246 (+)
G1896720 NA non-coding downstream 74033 6596671 ~ 6599586 (+)
G1896721 NA non-coding downstream 81951 6604589 ~ 6604790 (+)
G1896738 NA non-coding downstream 173569 6696207 ~ 6697600 (+)
G1895266 LOC106612719 other upstream 998460 5521415 ~ 5522865 (+)
bl1s3 bl1s3 other upstream 1001293 5518991 ~ 5520163 (+)
G1894083 LOC106612398 other upstream 2076349 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 2179921 4336602 ~ 4341404 (+)
G1893604 NA other upstream 2230727 4289908 ~ 4290598 (+)
G1896894 NA other downstream 417778 6940416 ~ 6941556 (+)
G1896931 NA other downstream 495157 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 794314 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 1553568 8076117 ~ 8080686 (+)
G1898300 NA other downstream 2834413 9357051 ~ 9359164 (+)

Expression


Co-expression Network