G1896720


Basic Information

Item Value
gene id G1896720
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6596671 ~ 6599586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2169594
AGGAAACCATTAAATgcacattttcaaaatgtattttttaatttagctaggcaagtcagttatgaacaaattcttatttacaatgacggcctacctcgggccaacactgggccaattgtgcgctgccctatgggactaccaatcactTGAGGATGAACATAGTGCTTTTGTAGGAAATTCATTTTTTGTTGTGAGGGCTACATTTGACTTACTGTAATTTTAGATAACTAAGAGGCCTAATTTTAGTACTACATACACTTTCAGATACAGCTACTAGTGTACAGTATACATTCATGCCAATGTGATCAGCAATGGCTTGATGTCTTGTCCTCATTCCATTTCATATTCACACATGCACATGGTAAGGTATTGATTGGCACCAGCTTTGCAAATTGATAATTCAATTAATATATAAAATTTTGGTGACGAACATAAAAGGTTAAGGAAAACCTGACAGAGAAGTATTTtgatatacatgtatatattatcTTTTAAACAATTCAAAGAGTTAAGTTCATTGGTAAAACAGAGCATAAAACAGGGATTTTATAGAACTTTTTAAAAAATAATCAAGAGGATCACGTGAAAAACTTGAATCTCAGTCAATATAGAAAAAAAACCTTTGACTTTACATAGAGTAAATTCCTTTAAATTAAACATCATAAAAGTACACAATATTAGTTTAATCTCTACACCCTCTACAACTTCAGTTAACAGATAACCTATAACTATCCTAACAAGAACCATTTCACCCACTATTTCCCTGGCACAtattgaaataataaagtcatttAACACTCAAATAGTAAGATTACAGAAAGTCTACaacccccttgaacttttttttcacattttgttacattacaaagttggattcactttttttttcttcaacaatctacacaaaatactgtaATATAATGTCAAagtacattatttaaaaaaatgttaagaCTAATTAAAAATCAAACACTAATATACCTTGATTGgttaagtattcacccccctgagtcaatacatgttagaatcacctttggcagcgattatgaGTCTCTTGAGTAAGTCTCAaaagagctttgcacacatgTATTGTggaatatttgcccattattcttttcaaaattcttccaagctctgtcaaggtgtttgggatcatggctagacagccattttcaagtcttgccatagattttcaagcagatttaagtcaaaactgcaaattggccactcaggaacattcactgtcttcttggttaacaactccagtttagatttgactttgtgttgtaggttattgtccttctgaaaggtgaatttctctcccagtgtctggtgtacaagcagactgaagcaggttttcctcaagattttgcctgtgctcagCTCCATCCCgtttcttttcatcctgaaaacCTCCCCAGTCTTTGCCTACGTCAAGCTTCTGAACTAATTTAGACTCGCCTAAATAAAGGAGGTGAATAATTACGCAACATTGAATAACAGTGaatcattttttttgttatttcatttgtaaaacattttaaaaaatttattttcactttgacattacggaGTATTTTGTGTTGATCCATTTTTACAATGAAATCTATTTCaatcctactttgtaacacaacaaaatgtgaggAAAGTTCAAGGGGGATGTAGAATTTCTATAGGCACTGTAAATCTACTTTACCATGAATCTATCTTTGGTTTCTACGCACGTGTATAGGCTACACAAGCAGTATCGTATCAAAACTATAGATTGCACATCTATTACCATCGAGAGAGATGGTCTTACATTCAGTATAAAATAGAGAGGTATCCATCCCACTTCTTACATGCTGGATAAAGCATCTTTGTTGGGCACTGTGAAAGCCATCTTATTGTATCGCGTAGCACTGAAAGTCTCCGTTTCTGTCTTATAAATCGATGGCGACATACATTAACTGCTGGTTTGAGGTTTCAGCAAAGAGCAAACAATTAGCTCCGTGACAGTAAAAAGTCAGTTTTACGTAAAGGGCAAATGTGACGCAAAACAAACTCCCAAAAAACGGTCACAAGAGGAACAGTCCAAGTCTATACGTTGCTGGAAGGTTTAGGGAAGTCATCAGTCTTTTTCAATGCCACTCAGAGATCTATTAGAAAGATGTTCCACGAAACAGAAAACAGACCTAAAATCAACTATAAACAGGAcagatgtattttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttacaatggcggcctaccctggccaaacccagacgacgctgggccaattgtgcgccaccctatgggactcccaatcggccggttgtgatacagcctggaatcgaaccagggtttgtagtgacgcctctagcactgagatgcagtgccttagaccgctgcgccactcagaagCCCTAGATGAAGTGCATACTTCCCAAAGATGGTCCACTGGTTTATAAAGTCAGTGACGAATACTAATAAGTTGATGTTTGAGGGACAAAGGGGTGAATTAGGTATTAGAGGTGAGCAAGGGCTGGGGGTATGGTCACCCTCCATCCAACCAGACAGTGGTGTGGTAGTGTAAGGCCTGCCCCATGGAGGTAGAGGTGTATGATGATTGGCTGCGAGGTGGGGAGAACCTGGTGGATTATCATGTTGGTTAGCTGTGAGGTGGGGAAAACCTGGTGGATTGCCGTGGTGATTGGCTGTGGGGTGGGGAAACCTGGTGGATTGCCGTGGTGATTGGCTGTGGGGTGGGGAAACCTGGTGGATTGTCGTGGTGATTGGCTGTGAAGTGGCGAGAAACTGTTGAGATTGTCGTTATCTGCAGGCACCAGGCTGCCGCTCCACTCAAGCGT

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2169594 True 2874 lncRNA 0.39 2 6596671 6599586

Neighbor

gene id symbol gene type direction distance location
sertad3 LOC106612704 coding upstream 132843 6461766 ~ 6463828 (+)
LOC110503591 LOC106612705 coding upstream 135801 6457810 ~ 6460870 (+)
LOC110503588 LOC106612710 coding upstream 226813 6363057 ~ 6369858 (+)
LOC110503587 LOC106612711 coding upstream 240174 6285718 ~ 6356497 (+)
LOC118944026 NA coding upstream 426878 6156840 ~ 6169793 (+)
LOC110503600 LOC106612698 coding downstream 2394 6601980 ~ 6604021 (+)
LOC110503605 NA coding downstream 195559 6795145 ~ 6818270 (+)
LOC110503606 LOC106612691 coding downstream 259450 6859036 ~ 6896546 (+)
LOC110503608 LOC106612689 coding downstream 315757 6915343 ~ 6932895 (+)
LOC110503308 LOC106612688 coding downstream 348292 6947878 ~ 6953071 (+)
G1896718 NA non-coding upstream 1425 6595010 ~ 6595246 (+)
G1896698 NA non-coding upstream 47365 6548689 ~ 6549306 (+)
G1896494 NA non-coding upstream 74033 6521325 ~ 6522638 (+)
G1896493 NA non-coding upstream 75447 6520883 ~ 6521224 (+)
G1896492 NA non-coding upstream 76131 6520237 ~ 6520540 (+)
G1896721 NA non-coding downstream 5003 6604589 ~ 6604790 (+)
G1896738 NA non-coding downstream 96621 6696207 ~ 6697600 (+)
G1896780 NA non-coding downstream 130073 6729659 ~ 6730771 (+)
G1896785 NA non-coding downstream 137943 6737529 ~ 6740303 (+)
G1896798 LOC106612693 non-coding downstream 157888 6757474 ~ 6760858 (+)
G1895266 LOC106612719 other upstream 1073806 5521415 ~ 5522865 (+)
bl1s3 bl1s3 other upstream 1076639 5518991 ~ 5520163 (+)
G1894083 LOC106612398 other upstream 2151695 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 2255267 4336602 ~ 4341404 (+)
G1893604 NA other upstream 2306073 4289908 ~ 4290598 (+)
G1896894 NA other downstream 340830 6940416 ~ 6941556 (+)
G1896931 NA other downstream 418209 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 717366 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 1476620 8076117 ~ 8080686 (+)
G1898300 NA other downstream 2757465 9357051 ~ 9359164 (+)

Expression


Co-expression Network