G1899160


Basic Information

Item Value
gene id G1899160
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6695396 ~ 6697633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2172267
TCATTTGACATTTCCCACAAATCAAATCACTGGCTGGACACTGATACAAAATAAAACACAATCTACAGAGGCATTTCATTTGATTGATATCCTCAGTGGTAAGACAAGGTGTCAGTGTACCCCAGTTGTCCTATATCAATCAGAAATAACTAACACTGTGAATACTGATCTTTGTGTTACTACTGTATTTGGGATTGTCATGCATATGATAATTGGTATACTATATTACTCTCTGAGGAACCCAAGCTTGAAATTACTGTAAGATTTTACCCAAATGAACCCATTAATTTGTATGGTACAGTAGGACACACTGTCagagcagcctggtctcatagactagtcaTAACATAGCAAACGAAAATCCTGGCcactcaaattagtataatattttatgtttggtatggtaTTAAAGTGTCATCAAACGCACATCCTTTAGTGGGGCGCAGGGCCGAAGAATAAAAGTCGCCATAAAAGAAATAGAGCCCGCaaacaaaaggagggtggttggttgaCGTGGATGGGTTGCCATATAATGTGAACGTCTAGCAAACCAAAGGTTACATGTTTGAATCTTATCACGGACAACTTGagtattttagctaattagcaacaaCCACTTAGTatattttagctactttgcaactacttagcatgttagctaaagctaaccttaaccctaacccctagcctagctaacgttagccacctagctaacattagtgttagccacctagctaacgttagccacaacaaatgggaattcataacatataatacgtattgcaaatttgtaacatattgtacgaattgcaattcataacatatcatatgaaatggatccacaaattaatacataccataccaaaTGTGACATATCATACTCATTTCAGTCCAGGTTGGTCAGAGGTGTGCCTGATAGGATTGTAATCAGGAAAATGTGAAAACAATGTCTGTTTTTGCTTTCCTTCATGATGTCATGCTAAATGGTCCAAGGCCCTTTTAGGGTGTTGTGTCAAAGTCAACACTACATTTAGTGTGTGTTTTCCCCGTGCTGTTGGTCTCAACATGGAATTAAGTCATTTTTCTCTGAAAAAAATATAGTTGGCCCCCATATGAAAATCTGTTTACTGTGTCACAATGATACACAGTGGGTACATTTAAAGCAGTGACGTGTAATATTGTGAATTTTCATGCAGAGCTACAGATAACCTCTTACTGTATGTAATTACTGTCTCATTGTGCTGGCTTTTTCAATTCACACAACCATCATTTTCTttaccacagtatgttgtgataTCCTCTGTAAAACACACAGGTTTGCTTCCCAACACGTGCTGTTGAGAGCATACTGGCAAAAGATAACAGGCTGTATTTATGGAAACTTGGTTGTTTTCACCAGATGTAAAACATTTGAACCTAAGGTTTTGTATTCATatgaaagaaaatgtatttttctatTTATATAACATGCACTGTATCAGAATGGATCCTTTACCCAGTAATACAAACTGCTTAATTATTTCATTGTGATCTAGTTTGGTGGTTCCTATTAAATTACCTACTGCACTGAATGGGCAAAATGTAATATAATTTTGTGCAAATGTAGAATAGCATTAGCATATAACTTTGAAGCTATTTAAAATCAGGACAGACactacacttttagaaaaaaggtcctacctagaacctaaaagggttttgCGCAATGGCGACCCATGGCTATTGGACCTAGGCCTTCAGTGGggggattattattttttttactacatgTACCAAACTCAAAAATCAAGAGAAATTACAGAAACGTAGCATCACGTATCAATGCGCCCAACTGAATCGAACAGGCCTGAGGCTGAGCCGTGCTTCGGACTGCCACTCACACCGAGATGGCATCCGCACGGATAATGCTAccagcaacaacaaccacactgctTACACAACCTGTGGTAGCCTAACGCCATCACTATCCcaccatcaccaaaagcgacaacAGTGACACATCAAAGGATGTGAGTGTGACAGTCTTGTGATGCTGAACGGACAACGTCCGTAATATGCAGCGCTCTCCATGTAGGAGAGCGCACTTGACAGCAGTCAAACACAGCGTGATGTTAAAGAATAAGCAACACATTCATGCGGACATAATAAGAGAGTAGGTCCCAATCGtaagaatacaaaaacacaagCTAGCTAAGTCAGCCATTGGCTAGACTAAcagaagctacagtgccttcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2172267 True 2238 lncRNA 0.39 1 6695396 6697633

Neighbor

gene id symbol gene type direction distance location
LOC110503601 LOC106612696 coding downstream 8559 6623545 ~ 6686837 (-)
LOC110503599 LOC106612697 coding downstream 93567 6596697 ~ 6601829 (-)
LOC110503598 LOC106612699 coding downstream 106395 6584749 ~ 6589001 (-)
LOC110503597 LOC106612700 coding downstream 150584 6537798 ~ 6544812 (-)
LOC110503595 LOC106612701 coding downstream 184375 6490652 ~ 6511021 (-)
LOC110503602 LOC106612694 coding upstream 1354 6698987 ~ 6735315 (-)
LOC110503603 LOC106612693 coding upstream 59841 6757474 ~ 6795108 (-)
LOC110503307 LOC106612692 coding upstream 203831 6901464 ~ 6908734 (-)
zgc:162698 LOC106612685 coding upstream 277125 6974758 ~ 6986323 (-)
LOC110503623 LOC106612682 coding upstream 423013 7120646 ~ 7123814 (-)
G1899158 NA non-coding downstream 279 6694626 ~ 6695117 (-)
G1899093 NA non-coding downstream 123315 6567369 ~ 6572081 (-)
G1899085 NA non-coding downstream 135649 6559063 ~ 6559747 (-)
G1899083 NA non-coding downstream 139480 6555697 ~ 6555916 (-)
G1899082 NA non-coding downstream 140723 6554359 ~ 6554673 (-)
G1899187 NA non-coding upstream 43539 6741172 ~ 6791865 (-)
G1899231 NA non-coding upstream 121088 6818721 ~ 6820879 (-)
G1899262 NA non-coding upstream 164734 6862367 ~ 6862566 (-)
G1899263 NA non-coding upstream 165086 6862719 ~ 6863078 (-)
G1899277 NA non-coding upstream 180204 6877837 ~ 6878047 (-)
LOC110503590 LOC106612705 other downstream 235331 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 463588 6181377 ~ 6231808 (-)
G1896030 NA other downstream 826178 5868896 ~ 5869218 (-)
G1894611 NA other downstream 2341460 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 2400918 4289886 ~ 4294714 (-)
G1899875 NA other upstream 1349146 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 2873238 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 3307739 10005372 ~ 10012354 (-)
G1901206 NA other upstream 3507587 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 3701409 10399042 ~ 10399857 (-)

Expression


Co-expression Network