G1896738


Basic Information

Item Value
gene id G1896738
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6696207 ~ 6697600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2169612
CAAAACCTTAGGTTCAAATGTTTTACATCTGGTGAAAACAACCAAGTTTCCATAAATACAGCCTGTTATCTTTTGCCAGTATGCTCTCAACAGCACGTGTTGGGAAGCAAACCTGTGTGTTTTACAGAGGAtatcacaacatactgtggtaaAGAAAATGATGGTTGTGTGAATTGAAAAAGCCAGCACAATGAGACAGTAATTACATACAGTAAGAGGTTATCTGTAGCTCTGCATGAAAATTCACAATATTACACGTCACTGCTTTAAATGTACCCACTGTGTATCATTGTGACACAGTAAACAGATTTTCATATGGGGGCCAACTATATTTTTTTCAGAGAAAAATGACTTAATTCCATGTTGAGACCAACAGCACGGGGAAAACACACACTAAATGTAGTGTTGACTTTGACACAACACCCTAAAAGGGCCTTGGACCATTTAGCATGACATCATGAAGGAAAGCAAAAACAGACATTGTTTTCACATTTTCCTGATTACAATCCTATCAGGCACACCTCTGACCAACCTGGACTGAAATGAGTATGATATGTCACAtttggtatggtatgtattaatttgtggatccatttcatatgatatgttatgaattgcaattcgtacaatatgttacaaatttgcaatacgtattatatgttatgaattcccatttgttgtggctaacgttagctaggtggctaacactaatgttagctaggtggctaacgttagctaggctaggggttagggttaaggttagctttagctaacatgctaagtagttgcaaagtagctaaaatatACTAAGTGGttgttgctaattagctaaaatactCAAGTTGTCCGTGATAAGATTCAAACATGTAACCTTTGGTTTGCTAGACGTTCACATTATATGGCAACCCATCCACGtcaaccaaccaccctccttttgtttGCGGGCTCTATTTCTTTTATGGCGACTTTTATTCTTCGGCCCTGCGCCCCACTAAAGGATGTGCGTTTGATGACACTTTAAtaccataccaaacataaaatattatactaatttgagtgGCCAGGATTTTCGTTTGCTATGTTAtgactagtctatgagaccaggctgctctGACAGTGTGTCCTACTGTACCATACAAATTAATGGGTTCATTTGGGTAAAATCTTACAGTAATTTCAAGCTTGGGTTCCTCAGAGAGTAATATAGTATACCAATTATCATATGCATGACAATCCCAAATACAGTAGTAACACAAAGATCAGTATTCACAGTGTTAGTTATTTCTGATTGATATAGGACAACTGGGGTACACTGACACCTTGTCTTACCACTGAGGATATCAATCAAATGAAATGCCTCTGTAGATTGTGTTTTATTTTGTATCAGTGTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2169612 True 1394 lncRNA 0.38 1 6696207 6697600

Neighbor

gene id symbol gene type direction distance location
LOC110503600 LOC106612698 coding upstream 92186 6601980 ~ 6604021 (+)
sertad3 LOC106612704 coding upstream 232379 6461766 ~ 6463828 (+)
LOC110503591 LOC106612705 coding upstream 235337 6457810 ~ 6460870 (+)
LOC110503588 LOC106612710 coding upstream 326349 6363057 ~ 6369858 (+)
LOC110503587 LOC106612711 coding upstream 339710 6285718 ~ 6356497 (+)
LOC110503605 NA coding downstream 97545 6795145 ~ 6818270 (+)
LOC110503606 LOC106612691 coding downstream 161436 6859036 ~ 6896546 (+)
LOC110503608 LOC106612689 coding downstream 217743 6915343 ~ 6932895 (+)
LOC110503308 LOC106612688 coding downstream 250278 6947878 ~ 6953071 (+)
LOC110503611 LOC106612686 coding downstream 266765 6964365 ~ 6973957 (+)
G1896721 NA non-coding upstream 91417 6604589 ~ 6604790 (+)
G1896720 NA non-coding upstream 96621 6596671 ~ 6599586 (+)
G1896718 NA non-coding upstream 100961 6595010 ~ 6595246 (+)
G1896698 NA non-coding upstream 146901 6548689 ~ 6549306 (+)
G1896494 NA non-coding upstream 173569 6521325 ~ 6522638 (+)
G1896780 NA non-coding downstream 32059 6729659 ~ 6730771 (+)
G1896785 NA non-coding downstream 39929 6737529 ~ 6740303 (+)
G1896798 LOC106612693 non-coding downstream 59874 6757474 ~ 6760858 (+)
G1896799 LOC106612693 non-coding downstream 71203 6768803 ~ 6776762 (+)
G1895266 LOC106612719 other upstream 1173342 5521415 ~ 5522865 (+)
bl1s3 bl1s3 other upstream 1176175 5518991 ~ 5520163 (+)
G1894083 LOC106612398 other upstream 2251231 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 2354803 4336602 ~ 4341404 (+)
G1893604 NA other upstream 2405609 4289908 ~ 4290598 (+)
G1896894 NA other downstream 242816 6940416 ~ 6941556 (+)
G1896931 NA other downstream 320195 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 619352 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 1378606 8076117 ~ 8080686 (+)
G1898300 NA other downstream 2659451 9357051 ~ 9359164 (+)

Expression


Co-expression Network