G1896798 (LOC106612693)


Basic Information

Item Value
gene id G1896798
gene name LOC106612693
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6757474 ~ 6760858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2169674
TTGGGTTAGAAACTTTATTAACAAAACGAAGGCAAAGCACAGCTTAAGCTTACTCCTAAATATGTATTAAGTGCTAGGTGCCACACCACCACAATACAGTTAATATTAGAATACCACAGCCACTCAGATATACCTCTATAGACCTTTGCAACATAAATAGCAGCTACAACTGTGTTTAAATAGCCTTAAAATAGTCTCGACATGCTTATTCTCTGAAGTCAGTGCCCCACCTAGTGGCACCTCAGGACAGTACCATCAAACATatgtgcagagaggagagggttaaaAGGTGGGTGTTTTTATAGGCACAGCATTGCTGCCCTCTGGTGGGCAGGAGGCGACGGTGGAGACTGATGCTGCAGGGTTGTCTAGGCGACCACCCACTGGAGGATGCTGGTGTCCTTCCCTCCGGTGGAGATCAGGTGACTGTCGTCGTGGAGAAAGGCAACGTTGGTCACATGGCTGCTGTGGCCACCATAGGTATGGCTTGGGGCCCTTGGCTGGGAGCAGGGGTTGGAGAACAAGTGCACTTTGCCAAAGTCGTCAGCAGAGGCCAGCAGGGAGGAGTCATGTGACCTGCACACGGCGTTGATGTCCGTGCCGTCAGCACCGTCAGGCCAAACGCCAAAGACGCTGAAGCCTAGAACACAAGTGGAGGTTGCCCACTCCACATTACGAACTAGGTCCATGCTCGTCACATGTTTTCCGCTTGAAGCTTCCCAGAATAGGATCTCGTAGTCTCCTGAGTTGGTTACGATGTATTGGCTGTCGACGGACCAATCCAGATGGGTGACAAAACTGGAGTGACCAGTGCATTTCCCCACGCGGCTGTACTTCTTGCCATTCTCCATCACGGCATAGATGTAAACAAAGTTGTCATGGGAACCTACGGCTAGGAAGTTGCCGTCTGGGGAGTACTTGATATTAGAGATTATCTCGTTGCCATCAGTGTGCATGAACACCAGGTCTCGGGTGTCAGCGTCCAGCACCAACcacCTTCCTGTCATGGTCCCCACTGCCAGCACAGCTCCACTGGGGTGAAACCCTGCACAACGCCCTGGGTCCTCGATGGTCTTGCTCCAGAGAGGCTGATGGGAGTTGGTGTCCCATAGGTGGACCTGCTTGTCCTGGCCACAAGTCACAAACTGCTCCATGGAAGGATGGATGTCCAGACCCCACAGCTcatctgt
>TU2169677
TTGGGTTAGAAACTTTATTAACAAAACGAAGGCAAAGCACAGCTTAAGCTTACTCCTAAATATGTATTAAGTGCTAGGTGCCACACCACCACAATACAGTTAATATTAGAATACCACAGCCACTCAGATATACCTCTATAGACCTTTGCAACATAAATAGCAGCTACAACTGTGTTTAAATAGCCTTAAAATAGTCTCGACATGCTTATTCTCTGAAGTCAGTGCCCCACCTAGTGGCACCTCAGGACAGTACCATCAAACATatgtgcagagaggagagggttaaaAGGTGGGTGTTTTTATAGGCACAGCATTGCTGCCCTCTGGTGGGCAGGAGGCGACGGTGGAGACTGATGCTGCAGGGTTGTCTAGGCGACCACCCACTGGAGGATGCTGGTGTCCTTCCCTCCGGTGGAGATCAGGTGACTGTCGTCGTGGAGAAAGGCAACGTTGGTCACATGGCTGCTGTGGCCACCATAGGTATGGCTTGGGGCCCTTGGCTGGGAGCAGGGGTTGGAGAACAAGTGCACTTTGCCAAAGTCGTCAGCAGAGGCCAGCAGGGAGGAGTCATGTGACCTGCACACGGCGTTGATGTCCGTGCCGTCAGCACCGTCAGGCCAAACGCCAAAGACGCTGAAGCCTAGAACACAAGTGGAGGTTGCCCACTCCACATTACGAACTAGGTCCATGCTCGTCACATGTTTTCCGCTTGAAGCTTCCCAGAATAGGATCTCGTAGTCTCCTGAGTTGGTTACGATGTATTGGCTGTCGACGGACCAATCCAGATGGGTGACAAAACTGGAGTGACCAGTGCATTTCCCCACGCGGCTGTACTTCTTGCCATTCTCCATCACGGCATAGATGTAAACAAAGTTGTCATGGGAACCTACGGCTAGGAAGTTGCCGTCTAAGAGCAGGAGAGTTCTTTTTTTAATGG

Function

NR:

description
PREDICTED: echinoderm microtubule-associated protein-like 2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2169674 False 1190 lncRNA 0.52 8 6757474 6760858
TU2169677 True 937 lncRNA 0.50 5 6757474 6759138

Neighbor

gene id symbol gene type direction distance location
LOC110503600 LOC106612698 coding upstream 153453 6601980 ~ 6604021 (+)
sertad3 LOC106612704 coding upstream 293646 6461766 ~ 6463828 (+)
LOC110503591 LOC106612705 coding upstream 296604 6457810 ~ 6460870 (+)
LOC110503588 LOC106612710 coding upstream 387616 6363057 ~ 6369858 (+)
LOC110503587 LOC106612711 coding upstream 400977 6285718 ~ 6356497 (+)
LOC110503605 NA coding downstream 34287 6795145 ~ 6818270 (+)
LOC110503606 LOC106612691 coding downstream 98178 6859036 ~ 6896546 (+)
LOC110503608 LOC106612689 coding downstream 154485 6915343 ~ 6932895 (+)
LOC110503308 LOC106612688 coding downstream 187020 6947878 ~ 6953071 (+)
LOC110503611 LOC106612686 coding downstream 203507 6964365 ~ 6973957 (+)
G1896785 NA non-coding upstream 17171 6737529 ~ 6740303 (+)
G1896780 NA non-coding upstream 26703 6729659 ~ 6730771 (+)
G1896738 NA non-coding upstream 59874 6696207 ~ 6697600 (+)
G1896721 NA non-coding upstream 152684 6604589 ~ 6604790 (+)
G1896720 NA non-coding upstream 157888 6596671 ~ 6599586 (+)
G1896799 LOC106612693 non-coding downstream 7945 6768803 ~ 6776762 (+)
G1896806 NA non-coding downstream 57939 6818797 ~ 6819144 (+)
G1896844 NA non-coding downstream 67814 6828672 ~ 6828979 (+)
G1896847 NA non-coding downstream 74769 6835627 ~ 6835875 (+)
G1895266 LOC106612719 other upstream 1234609 5521415 ~ 5522865 (+)
bl1s3 bl1s3 other upstream 1237442 5518991 ~ 5520163 (+)
G1894083 LOC106612398 other upstream 2312498 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 2416070 4336602 ~ 4341404 (+)
G1893604 NA other upstream 2466876 4289908 ~ 4290598 (+)
G1896894 NA other downstream 179558 6940416 ~ 6941556 (+)
G1896931 NA other downstream 256937 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 556094 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 1315348 8076117 ~ 8080686 (+)
G1898300 NA other downstream 2596193 9357051 ~ 9359164 (+)

Expression


Co-expression Network