G1899231


Basic Information

Item Value
gene id G1899231
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6818721 ~ 6820879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2172344
tttggtacatgaccataaacaatgtgttagggtgcctgtatcagttttacatttaagacactgaggagaagaggaagtgggGCTAAAAGCATGTCTGCGATTTGGGGATATATGCAATCTGTGTATTATTCTTAACTGGATTGCTCTAGTATGATtacatatatatattgtttttgcaTATCTCCAAATGTCCTCCCACATCTCTTCGTCAATAGTAACAGACAATTCTTTCTCCCACACTTGTATCACCCTCTGTGTGTCAACAgcagaaaaggaccttaaagcaTCAAAAAACAGACTTACAGACATTTTCCTTTCTGGGACAAAAAAAAGCATTCTTTCAATGACAGTCACATCAGGGTTGCCATTTAAGGTGGTGCTCTTCAAAATATAATGTCTTACTTGTAGGAAGCGGAAAAAGTCGAAAAGTCGATATTTCTCGACCATCTGCTCAAATGACAATAAAATCTTATCAGCAAATAAATAATTTAGTCTGCATATGCCCTTATTAAGCCAAAAGTTAAAGCCAAGCATCCAGCAATCCTGGACCAATATCTAGGTTGTTAAGAATTGGAGTAAGAGCAGGAGGTTAATTTGGACATTCCCAAAAAAACATTGAACTGACCTCCATACTTTGAGTGTGTTAAGTGTAATGGGATTATTGCAGTGACCTTTTACAGACTTGAAACATCTGAAAAATAAAAGATCCTGTAAGGGGTATTTTGAAAGAGAAGTCTCAAtgtctaaccaaatagagaagtCATCATTTGTGATCCAGTCAGAAATATAACATAGTTGGACACACCATTGATAGAACCTGATATTGGGCAGGTCCAAGCCGCCCATAGAACTTGGCAGCTGCAATATTGCCATCTTAAGTCTTGGCTTGTGTTTACTCCATTTAAAGGACGTTAGCCATCCATTTACATCCTGTTTTACCTTATTGGAGAGTAATACTGGGATCATTTGGATTGGGTAAAGTAGTCTAGGTAAAATGTTCATTTTCAAGAGGGATATTCTACGCAACCATGAAATCGGGAGAGAGTTCCAGCGCTCCAGATCCTGTCTTATTGTATCAAACAATGGAACAAAATTGGCTTTGTACATTTGCTGGTATTTAGGAGTTGCAAATATACACAGATAGGTCAAACTTGAGGGAGACCATTTAAAAAGGAAGGGGGGAGAAGTATTAGGTACAGAGTGTTTGTTACCAAGTGGCAtagcctctgatttagttaagTTAATCTTGTAGCCTGAGAGTTCGCTGAATAATTCAATAATATTAACAAGAGATGTAATTGAAGTCTCGGGACTAGAGATGAATATCAGGACATCATCAGCATACAAGCTTACTTTATGGTGAACATCACCAATGAGCAGCCCCTGTATAGCAGGCTAACCTGATGGCCTCGGCCAGTGGTTCCATAGCGAGTGCAAATAGGAGAGGGGACGTGAGGGGAACATTTTGCTAtttcacattttgccatgaggctgaggtGTATTTTTGCCTGTTTAGAGCACATTTCCTGCAGGTGGGGGTCCTTCAGGGGTCCATTGGCCCCTCTCCAGCAATGGCAAGCATAGTCTGTCTGACCAGCCATCTGAGAAGTGTGGCATGGCCATGTGGGAAAAGATCatgaggaggagggaaagaactGTGAGTAATAATAATTCATTTAATTTGCAAAGCACTTTCATCACACCCAAGGCAGTGGACTTGCATAAATAGAGTGTATGCATCGTGGCATATTGTCGTTATTAAGGTTGGGGGTCTTCTGTACAGCTGCAGTCAAAAGACAGGGGCATACTGTAACTtgtacactgagtttacaaaacattaggaacacctgctctttccttgacatagactgaccaggtgaatctaggtgtaagctatgatcccttattgatgttacttgttaaatcctTCAACGATGCTCGGTTTTTCATTCTAAACAGTTTCCAGTGtatatcaagaatagtccaccacccaaggacactcagccaacttgacactgtgggaagcattggagtcaacattggccagcatccctgtggaacgcttggcACTTTGTAGAGTCCTTGTCCCGACGAATTGTCccaatatttggaaggtgttcctaacgttttctacactcagtgtagtacagagcatttgg

Function

NR:

description
LINE-1 reverse transcriptase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2172344 True 2159 lncRNA 0.41 1 6818721 6820879

Neighbor

gene id symbol gene type direction distance location
LOC110503603 LOC106612693 coding downstream 23613 6757474 ~ 6795108 (-)
LOC110503602 LOC106612694 coding downstream 83406 6698987 ~ 6735315 (-)
LOC110503601 LOC106612696 coding downstream 131884 6623545 ~ 6686837 (-)
LOC110503599 LOC106612697 coding downstream 216892 6596697 ~ 6601829 (-)
LOC110503598 LOC106612699 coding downstream 229720 6584749 ~ 6589001 (-)
LOC110503307 LOC106612692 coding upstream 80585 6901464 ~ 6908734 (-)
zgc:162698 LOC106612685 coding upstream 153879 6974758 ~ 6986323 (-)
LOC110503623 LOC106612682 coding upstream 299767 7120646 ~ 7123814 (-)
LOC110503619 LOC106580766 coding upstream 308030 7128909 ~ 7150382 (-)
LOC110503624 NA coding upstream 337135 7158014 ~ 7184067 (-)
G1899187 NA non-coding downstream 26856 6741172 ~ 6791865 (-)
G1899160 NA non-coding downstream 121088 6695396 ~ 6697633 (-)
G1899158 NA non-coding downstream 123604 6694626 ~ 6695117 (-)
G1899093 NA non-coding downstream 246640 6567369 ~ 6572081 (-)
G1899085 NA non-coding downstream 258974 6559063 ~ 6559747 (-)
G1899262 NA non-coding upstream 41488 6862367 ~ 6862566 (-)
G1899263 NA non-coding upstream 41840 6862719 ~ 6863078 (-)
G1899277 NA non-coding upstream 56958 6877837 ~ 6878047 (-)
G1899280 NA non-coding upstream 59982 6880861 ~ 6881074 (-)
G1899282 NA non-coding upstream 60633 6881512 ~ 6882109 (-)
LOC110503590 LOC106612705 other downstream 358656 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 586913 6181377 ~ 6231808 (-)
G1896030 NA other downstream 949503 5868896 ~ 5869218 (-)
G1894611 NA other downstream 2464785 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 2524243 4289886 ~ 4294714 (-)
G1899875 NA other upstream 1225900 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 2749992 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 3184493 10005372 ~ 10012354 (-)
G1901206 NA other upstream 3384341 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 3578163 10399042 ~ 10399857 (-)

Expression


Co-expression Network