G1899530 (LOC106612674)


Basic Information

Item Value
gene id G1899530
gene name LOC106612674
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7327223 ~ 7328513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2172657
GGTGAGCTAGCATGACCTTACTGTTACCAATCAACAGTCATTGACAGTCATCATGTGACCCCCGTTGGAGTCCTTCGGAGTGGATCCCAGTGCACACTGGCTGACTCTTAGTAACCCAGTGCTCCACTGAGGGCTGTCCTTACCTGAGAGGGGCTCCCTTGGcttcacctcctccaccactTCCTCTTCATGAGATGAGTGGTCGGCCATGGACCCCCTATTCAGCTTGCCCAGGCCCACCATCTTCATGAAGGAGAGCCGTCGGCTGGAAGAGTCGCCCCCCTCGCTCTCTGAGCACAGCTCCCCGTTGGGCAGGCTTTCCTTGCGAAGGCTCTCCCTGCACTTCCCTGCAAATCTGAGTAAGCTTCCCTCTGAGCTCCGTCggcccttcttcttcttctctgaggTGGGGGTGCTTGCAACGGACCCCTGAGGGGAAGGGGTGGCAGTGCCCTTACTGCGTCCTGACATGCGGAGCCCCTTGCCCAGCTTGCCCAGAGTCTTTAGTGGGGAGGCGCCTCGGATCCGGTCCAGGGTGCCCTTGAACGAACTCCTCCCTGAGCCGCCACGTCTCTCCTCATTTGCCTCATTCTCATCCTCCTCGTCCTCGAAGGGGTTACGGTCTCGGGGTGTGCCCCCGTCCAGTAGTGAGTGTGCCTGAGCCCATTCCTCATTGTCACTGGGCACCTCAAAGGGGCTCAGCTTCAGGCTCATCTTGCGAAGGATCAGCTCGCCACGAGTGTTCTCCAACTCCCCGTTCACCCTGCTGCCTCCCTTCAGCCGCGCTGGGAGGTTCTTGAGGATGGGCATGCTTCCACTTGGGGGTTCAA

Function

NR:

description
tumor necrosis factor alpha-induced protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2172657 True 830 lncRNA 0.60 2 7327223 7328513

Neighbor

gene id symbol gene type direction distance location
spint2 LOC106612675 coding downstream 31751 7272344 ~ 7295472 (-)
LOC110503626 LOC106612677 coding downstream 70559 7193970 ~ 7256664 (-)
LOC110503624 NA coding downstream 143156 7158014 ~ 7184067 (-)
LOC110503619 LOC106580766 coding downstream 176841 7128909 ~ 7150382 (-)
LOC110503623 LOC106612682 coding downstream 203409 7120646 ~ 7123814 (-)
LOC110503632 LOC106612668 coding upstream 103791 7432304 ~ 7439464 (-)
LOC110503637 LOC106612664 coding upstream 176428 7504941 ~ 7507252 (-)
LOC110503640 NA coding upstream 184292 7512805 ~ 7515006 (-)
LOC110503655 LOC106580791 coding upstream 406620 7735133 ~ 7738306 (-)
LOC110503654 trad1 coding upstream 409940 7738453 ~ 7746131 (-)
G1899520 NA non-coding downstream 14316 7312544 ~ 7312907 (-)
G1899454 NA non-coding downstream 134873 7192146 ~ 7192350 (-)
G1899350 NA non-coding downstream 316730 6989719 ~ 7010493 (-)
G1899535 NA non-coding upstream 5805 7334318 ~ 7334659 (-)
G1899553 NA non-coding upstream 76084 7404597 ~ 7405750 (-)
G1899581 NA non-coding upstream 92056 7420569 ~ 7420832 (-)
G1899585 NA non-coding upstream 98438 7426951 ~ 7427170 (-)
G1899625 NA non-coding upstream 203024 7531537 ~ 7587823 (-)
LOC110503590 LOC106612705 other downstream 867158 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1095415 6181377 ~ 6231808 (-)
G1896030 NA other downstream 1458005 5868896 ~ 5869218 (-)
G1894611 NA other downstream 2973287 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 3032745 4289886 ~ 4294714 (-)
G1899875 NA other upstream 718266 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 2242358 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 2676859 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2876707 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 3070529 10399042 ~ 10399857 (-)

Expression


Co-expression Network