G1899553


Basic Information

Item Value
gene id G1899553
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7404597 ~ 7405750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2172684
CTCTCTCCAAGTAAAAGCAGGCTCAGCTTTGAAATACACGGGTCTTGACCTAATATGGAGTTAAACACacctcaaatgtattttatatctaTTCATGCTTTCATTTGATTGAGTAACAACGTATGATCTCATTATAGCTAATGCATGTGTGGCACTATTAATGATATAAGAATAGAATAGCAATCAAAGACTTACCAAGAGGGCTTGAGCTGTGAGCTGCCATTTGAACGTGTCATTCTTTGTTACTATTGGGAAGTGCAGTAGATCGCAAAAAGCCAAGTCCATGCTCCCGTGTTCATGATGACTTAGGTTCCAGCGATAACAGAAAATCTCTTCTCCAACCTGTTATATTGTGAAGAGGGTACCTCCCATTTGCTTTTTTTTGCTACTTTtgacccttttttctccccaattggtagttacagcctTGTCCCATCACCCatggttgcaactcaatattaggaaggtgttcctaatgtttggtctACTCAGTGTATAGATTGATTTAGACTCAAAGCAAGAGATACACGTTTACTTCCTTGTTATTCTGTGTGATTAACATCCCATTATGTATTTAAGAATGACTTCCCAGTATTCTCTGTTGAGGGATGTCATCCATTGTAATCAGGGGGCAGAGTGAGCATAACTATTCCTGGGTGTTGTACTTACATGGTATCAGTTCTCAGCAGGACAGTGACATCCATAGGCTACAGAAATAGGTCTGAGCTAAGGGAACAACACCTCAGTCCAGGAGGCAAGTCTGGGATTCCCATAAACAAGGTGTTGAATGGTTGGGGGTTGGTTCTCAGTACagggaaatacattttagaatacatGTCGATCAAGTGGACATACAGCATTGGATGAGCTTGGTGGTTTGTTATTAATATAGTCATTTAGCAAACGCTTTTATCCATCGGAAAGAACTGTTAACCTCGACCTGAATATTTGAAAGTACGTGCAGAGGCATCCAGGGTCTGTAAGGGCTATGTCCCTTGGTAGCACGATCTCATTTGTGTCagtaatgtaaaatatatatcccATAACGGATTTAACATGAACACAACATGAAATACGAAACTAAAagcctctgttttttttttttaaatgaacacccgcacgcacgcacacacacaatatacaccaccgttcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2172684 True 1154 lncRNA 0.40 1 7404597 7405750

Neighbor

gene id symbol gene type direction distance location
spint2 LOC106612675 coding downstream 109125 7272344 ~ 7295472 (-)
LOC110503626 LOC106612677 coding downstream 147933 7193970 ~ 7256664 (-)
LOC110503624 NA coding downstream 220530 7158014 ~ 7184067 (-)
LOC110503619 LOC106580766 coding downstream 254215 7128909 ~ 7150382 (-)
LOC110503623 LOC106612682 coding downstream 280783 7120646 ~ 7123814 (-)
LOC110503632 LOC106612668 coding upstream 26554 7432304 ~ 7439464 (-)
LOC110503637 LOC106612664 coding upstream 99191 7504941 ~ 7507252 (-)
LOC110503640 NA coding upstream 107055 7512805 ~ 7515006 (-)
LOC110503655 LOC106580791 coding upstream 329383 7735133 ~ 7738306 (-)
LOC110503654 trad1 coding upstream 332703 7738453 ~ 7746131 (-)
G1899535 NA non-coding downstream 69938 7334318 ~ 7334659 (-)
G1899530 LOC106612674 non-coding downstream 76084 7327223 ~ 7328513 (-)
G1899520 NA non-coding downstream 91690 7312544 ~ 7312907 (-)
G1899454 NA non-coding downstream 212247 7192146 ~ 7192350 (-)
G1899581 NA non-coding upstream 14819 7420569 ~ 7420832 (-)
G1899585 NA non-coding upstream 21201 7426951 ~ 7427170 (-)
G1899625 NA non-coding upstream 125787 7531537 ~ 7587823 (-)
G1899644 NA non-coding upstream 152479 7558229 ~ 7558601 (-)
G1899660 NA non-coding upstream 170691 7576441 ~ 7611786 (-)
LOC110503590 LOC106612705 other downstream 944532 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1172789 6181377 ~ 6231808 (-)
G1896030 NA other downstream 1535379 5868896 ~ 5869218 (-)
G1894611 NA other downstream 3050661 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 3110119 4289886 ~ 4294714 (-)
G1899875 NA other upstream 641029 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 2165121 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 2599622 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2799470 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 2993292 10399042 ~ 10399857 (-)

Expression


Co-expression Network