G1899626 (LOC106580784)


Basic Information

Item Value
gene id G1899626
gene name LOC106580784
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7582220 ~ 7585628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2172766
TGAAGGGGGACAGAACAAATGATTCAAACCAAGGGAAGGGCAGAAAACACTTACAAAGTACAGATTATGGGAAATGAACAGCTGTTTTGCTCCTTTAGGACTCTAcacagatggaaggagagaggagagatgagttgGACGTTAAGATGAAGGTTAAAAAAGCTACAGCTCTAGAGGGCAGAGAGGGGACCACTAAGCAATGCAGAAGGAAGTGAAAGGTTGAAAGGCACAAGGTTGGGTTAGAGACGTTAAGAGTGTGTGTAATGATCCATGTCAGCAGCTTTGAAAAGAGCCAAATTACCAACAGCACACACCTATAGGAAACACAGTGCTACTCTTTTCTGGTAGGATAGCATCCGTTCACAAACGTTGTAATGGGCATACAAAAACAAAATAGCAGAGGCAAACTGCTGTAATATTGTAAATATACCTCAGACTGGAAGAAATTAAGGAATTGAGCATGTCCCCTCAAAGCAATTTCCCCATTAATAACATTACCAACTTCCTCCATGCATTGGAAAAATCCAGGTGGGTGAGCTCTCACTCACGCTTACCATCTCCCTGCATGTCTGAAGTCCATAGTGTCAGGTTGTCACGTAACAACTGCATGATTAGTGTGGAGTCCTTGTAGCTTTCTTCGCTCAGCGTGTCCAGCTCTGCGATGGCGTCATCGAACGCAGCCTTCGCCAACCTGCAGTACAAAACACTGGTCTTATGTCGCACTCGTGTCAAGGAAATAAGTCACCTTACTGAATCGTTTGAGCACACATGATCAACAGCCTAATTAGAGCTCTAAATTAGAAGTCTATTGAGGAGAGCGGTGCGAGGTACTTGCCTGCACGCGCGGTCGGGCGAGTTGAGGATTTCATAGTAAAATACGGAGAAGTTAAGAGCGAGGCCTAGGCGAATGGGGTGTGTCGGTGGCAGTTCGATCATGGCGATGTCGCTAGCAGCTTTGTAGTAGAAGACCTTGGACTCTCCCGTATTAGCAGCTGGAATAAGGTGCTTGTCCAGTACATCAAGAATGTCATTACAGATTGACTTCAGCTCATTCTCAACCtTTGCCTGTATTCCCGGATCATTTTCAATTTGTCTTCTCCACCCTTGTTTTCTTCCCTTTGTTCAATACTGCTGATTATCCTCCATGATGCTCTCCTCGCCCCAATGACATTTTTGTAGGCCACTGATAGTAGGTTTCGCTCCTCGACTGTTAGTTCCACATCCAACCCGGCCACTCTCTTCATGGACTCCACCATTtCGTCATATCTTTCCGCCTGCTCGGCGAGTTTTGCCTGATATACTAAATCGTCCCGGTCGCCCATTTTGTTGCGAGTGGCGAAGTTTAGTTTAAACTGACAAATTGATAAAAAATGCTCGACAGTTGCTGCTACTAGGTCAATCTGTCGGCGGGTCCTGTGAAATCAACGGATAGATCAGTGGCGTTTCCACCCCACCGGTTGTACTGGAGTAAAAAAAAATGGCGAAAATCTC
>TU2172762
TGAAGGGGGACAGAACAAATGATTCAAACCAAGGGAAGGGCAGAAAACACTTACAAAGTACAGATTATGGGAAATGAACAGCTGTTTTGCTCCTTTAGGACTCTAcacagatggaaggagagaggagagatgagttgGACGTTAAGATGAAGGTTAAAAAAGCTACAGCTCTAGAGGGCAGAGAGGGGACCACTAAGCAATGCAGAAGGAAGTGAAAGGTTGAAAGGCACAAGGTTGGGTTAGAGACGTTAAGAGTGTGTGTAATGATCCATGTCAGCAGCTTTGAAAAGAGCCAAATTACCAACAGCACACACCTATAGGAAACACAGTGCTACTCTTTTCTGGTAGGATAGCATCCGTTCACAAACGTTGTAATGGGCATACAAAAACAAAATAGCAGAGGCAAACTGCTGTAATATTGTAAATATACCTCAGACTGGAAGAAATTAAGGAATTGAGCATGTCCCCTCAAAGCAATTTCCCCATTAATAACATTACCAACTTCCTCCATGCATTGGAAAAATCCAGGTGGGTGAGCTCTCACTCACGCTTACCATCTCCCTGCATGTCTGAAGTCCATAGTGTCAGGTTGTCACGTAACAACTGCATGATTAGTGTGGAGTCCTTGTAGCTTTCTTCGCTCAGCGTGTCCAGCTCTGCGATGGCGTCATCGAACGCAGCCTTCGCCAACCTGCAGTACAAAACACTGGTCTTATGTCGCACTCGTGTCAAGGAAATAAGTCACCTTACTGAATCGTTTGAGCACACATGATCAACAGCCTAATTAGAGCTCTAAATTAGAAGTCTATTGAGGAGAGCGGTGCGAGGTACTTGCCTGCACGCGCGGTCGGGCGAGTTGAGGATTTCATAGTAAAATACGGAGAAGTTAAGAGCGAGGCCTAGGCGAATGGGGTGTGTCGGTGGCAGTTCGATCATGGCGATGTCGCTAGCAGCTTTGTAGGCGACCAAACTGTTCTCTGCAGCCTCCTTCCGGTCGTTCCCGGTGGCAAACTCAGCCAGATACCTGTGGTAATCGCCTTTCATTTTGTAGTAGAAGACCTTGGACTCTCCCGTATTAGCAGCTGGAATAAGGTGCTTGTCCAGTACATCAAGAATGTCATTACAGATTGACTTCAGCTCATTCTCAACCGTTTGCCTGTATTCCCGGATCATTTTCAATTTGTCTTCTCCACCCTTGTTTTCTTCCCTTTGTTCAATACTGCTGATTATCCTCCATGATGCTCTCCTCGCCCCAATGACATTTTTGTAGGCCACTGATAGTAGGTTTCGCTCCTCGACTGTTAGTTCCACATCCAACCCGGCCACTCTCTTCATGGACTCCACCATTtctgtggggaggagagaggaagtcatTGGTGCTGAAAGATCC

Function

NR:

description
14-3-3 protein epsilon-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2172766 False 1491 lncRNA 0.46 4 7582220 7585628
TU2172762 True 1390 lncRNA 0.46 3 7583624 7585628

Neighbor

gene id symbol gene type direction distance location
LOC110503640 NA coding downstream 67214 7512805 ~ 7515006 (-)
LOC110503637 LOC106612664 coding downstream 74968 7504941 ~ 7507252 (-)
LOC110503632 LOC106612668 coding downstream 142756 7432304 ~ 7439464 (-)
spint2 LOC106612675 coding downstream 286748 7272344 ~ 7295472 (-)
LOC110503626 LOC106612677 coding downstream 325556 7193970 ~ 7256664 (-)
LOC110503655 LOC106580791 coding upstream 149505 7735133 ~ 7738306 (-)
LOC110503654 trad1 coding upstream 152825 7738453 ~ 7746131 (-)
LOC110503656 LOC106612654 coding upstream 286734 7872362 ~ 7875185 (-)
LOC110503659 NA coding upstream 352363 7937991 ~ 7947837 (-)
LOC110503311 LOC106612649 coding upstream 408913 7994541 ~ 8035329 (-)
G1899644 NA non-coding downstream 23619 7558229 ~ 7558601 (-)
G1899585 NA non-coding downstream 155050 7426951 ~ 7427170 (-)
G1899581 NA non-coding downstream 161388 7420569 ~ 7420832 (-)
G1899553 NA non-coding downstream 176470 7404597 ~ 7405750 (-)
G1899535 NA non-coding downstream 247561 7334318 ~ 7334659 (-)
G1899693 NA non-coding upstream 37932 7623560 ~ 7624082 (-)
G1899649 LOC106580786 non-coding upstream 53690 7639318 ~ 7647901 (-)
G1899648 NA non-coding upstream 70628 7656256 ~ 7659344 (-)
G1899709 NA non-coding upstream 73933 7659561 ~ 7659950 (-)
G1899711 LOC106612656 non-coding upstream 74590 7660218 ~ 7662348 (-)
LOC110503590 LOC106612705 other downstream 1122155 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1350412 6181377 ~ 6231808 (-)
G1896030 NA other downstream 1713002 5868896 ~ 5869218 (-)
G1894611 NA other downstream 3228284 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 3287742 4289886 ~ 4294714 (-)
G1899875 NA other upstream 461151 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 1985243 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 2419744 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2619592 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 2813414 10399042 ~ 10399857 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G17693 ywhae,LOC103365420,LOC107397237,LOC103145207 non-coding NC_053113.1 CM020910.1 17320084 ~ 17327676 (-)