G1899822


Basic Information

Item Value
gene id G1899822
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7869603 ~ 7872296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2172995
CAAAATACCACATTTTATTTTACAATAAATTCTTAATGGCACATTACATAACGAAATATACATATTCATGTTTAGGCTTTTTTAAATGAACATTTCCTTTCATTTGACCTCTTTCATTAATTTAATCTGCAATTACATTTTTACATAACATCAATAGCAAAAGATAAAATCAATAAATTATGGCCTTATTAACAAAGAGTAGGCTGAGGGGCACTTGTGGATGCCCTCTACAAACTAAAAGACTAGTTCCTATGTAACTTTCTGGCCTGCTCAACTTTCTGAGTTTTTGTGTACCACATAACAGAACTCCAGTCACAAATACTCCAGCGATAAGAATGAACCTCTATACAGCTATAGTGCATGGATATTCTCCCAAACTCAAATATAGCTGACTGATTTGGTCACATCAATGGAGACCTTGCAATTTCGATGTGTTCCTGGGTGAAGACATTCACACGTGTTTTGTTTGTAATCATATAGCTTGCAACAAGGTAAAGCAATCATATATTTTGGAACTACAATGCACTAACATTGTTTTGGGGTTTGTAAGATcaaatgtttttgctgtttgcttCTACTTAAGACTGAAAAATGAACCATCAAAATCACAAGGCATTCAATCACAGTTCCAAAATATGCAAGATCCCTTTAAAATATTATATTGccaattatttatttttggagaaatgttagtgagagaaaaaaaacattgtgaaATGACTTTAACTGCTGAAAACGATTTCCATGGAGCAGTCTGTGTGTTTCTCAGCTATGCACCCTTTTATAAGCATACATGTTTTCAATTAACATTGATTCATTGGGTGAAATACTACTGGCTGTTTATATAAGGACATGTGAGAAGCAGACCTCAGTTCAAATGCTACATTAAACCTTTTCAAATACGTCCTTTGTGCTTGATTAAGCCTGCCTGGCTTAATGGACACATACAATAGTCCCAAAACGGCAAACCAGGCAGGCTAGAGCAcacactcaaagtatttgaaagatttcgaattgtatttgaacccaggtctggattCATCAGACACCCACAGCTAAACGTAAACCAAAATAAACCTTATCCAAACTCTCTGCTCAACCTCTCACACAGTGAGAAGCACATGGAAAGTGAAAGGGTTTCAGATAGATTGTAAGGCGCGACTTTGGCTAAATTAAGCTTGTGACAGAGCGCAATGGCATTTTTCTTTTCGTGTGAGCAAATCTCCACAAATGGAGCACTTGATTTATGAGGGTCAAGTCCCTTCCTTCGGCAGCTTAAGACAAACCCGATCACTTCAATACTGTTTGATGAGGATTGAGCCATATAGATTAATGCCGTATCTATCAATTCCATGTCGAAAACAGGAAGTAAACAAAAATTCCAATTCCTTATTGTCCTCAATGTAATTCCTATAAGATTCAAAAATAAGTAGTTGTATTGAAATGGAACGGACCCCAACCCTAGAATCTATGCAGTATCTAAATACAGTATCTTTCTCTATTGTGGATTGATCCATTCTATTGACCTGCATtgactgtactgtgtgtgagGCCAGAGGGGAAGACGACCAGCATTACAACAGGTGACTCGAAAAGGAAGCGAAACTACTGCCGGAAGAACTCCTTGTAAGGCAATAGACTAACTGTCCCCAGACAGACAAACTGGGGCAAAGACAAGAGAGACATTTCCCATGGTGAAACAACATCCGTTTCTGAAGGCCAGTACCACAACTTACACACTCCTGGACCCATATATGGAGATCGTTGCAGAAGAGGACCACAATGAACAATCGCTGTAATCTGAGAGATGAGTGCAGCGAAAAAGTGACCTATAACCACAGTTTCGTAAATCAATGACGATGAATGTTGTgaggttaaaggcccagtgcaatcAAACACTAGCTTTTCCTGTGttctatatatatttccacactatgaggttggaataatactgtgaaattgtgaaaatggtgataatgccattttagtgtaagagctgttcgaaaagccctgaaatttctgcctgttCTGGTGGGATGAAGTTTTGGCCTTCCATTGGTGACATCACCACGCAGTacattggttaatagaccaataagaaagagagttcccaACCTCTATGCCAATAACAGCTCATTTtcagtttcccctccccactcccagATAGTCCTAGCAAAATTTTTGCTTGAGAAATTATCCTTTGCTAAGGAGCTGTttctgtttctttttgaccatttgaaAACAATCTCAGTAAGGTACtttattgttacccagaaataataTTATATTGAGATAAAATgcctgcattggacctttaaaccTTGCCTTATCTAGTTGTTGTATGAGGTTAATGTTACAGATGAGAATTTCAGCAACACATGGCGCCTAGCCTCTCACTGTGAGCTATTTCTGTACCAGAcatatcgagagagagagagagagagagagagagagagatactgagaggaCTCACAGGATTCTCCCTCCTTTCCAGCTCAGtatctgtctgcgtgtgtgctCTTATGCACTAGCTAATCCACTTAATTCCCTTTAGTCATGAAGTTCAGTACATTTTGTGATTCCATTGTGAATGCGTTGGTGATGTTGGGTATGTTCTTTGCTCCAACAGTGTTGTCCCTTTTGTGGAAAATCCAGATTTCTA
>TU2172996
CAAAATACCACATTTTATTTTACAATAAATTCTTAATGGCACATTACATAACGAAATATACATATTCATGTTTAGGCTTTTTTAAATGAACATTTCCTTTCATTTGACCTCTTTCATTAATTTAATCTGCAATTACATTTTTACATAACATCAATAGCAAAAGATAAAATCAATAAATTATGGCCTTATTAACAAAGAGTAGGCTGAGGGGCACTTGTGGATGCCCTCTACAAACTAAAAGACTAGTTCCTATGTAACTTTCTGGCCTGCTCAACTTTCTGAGTTTTTGTGTACCACATAACAGAACTCCAGTCACAAATACTCCAGCGATAAGAATGAACCTCTATACAGCTATAGTGCATGGATATTCTCCCAAACTCAAATATAGCTGACTGATTTGGTCACATCAATGGAGACCTTGCAATTTCGATGTGTTCCTGGGTGAAGACATTCACACGTGTTTTGTTTGTAATCATATAGCTTGCAACAAGGTAAAGCAATCATATATTTTGGAACTACAATGCACTAACATTGTTTTGGGGTTTGTAAGATcaaatgtttttgctgtttgcttCTACTTAAGACTGAAAAATGAACCATCAAAATCACAAGGCATTCAATCACAGTTCCAAAATATGCAAGATCCCTTTAAAATATTATATTGccaattatttatttttggagaaatgttagtgagagaaaaaaaacattgtgaaATGACTTTAACTGCTGAAAACGATTTCCATGGAGCAGTCTGTGTGTTTCTCAGCTATGCACCCTTTTATAAGCATACATGTTTTCAATTAACATTGATTCATTGGGTGAAATACTACTGGCTGTTTATATAAGGACATGTGAGAAGCAGACCTCAGTTCAAATGCTACATTAAACCTTTTCAAATACGTCCTTTGTGCTTGATTAAGCCTGCCTGGCTTAATGGACACATACAATAGTCCCAAAACGGCAAACCAGGCAGGCTAGAGCAcacactcaaagtatttgaaagatttcgaattgtatttgaacccaggtctggattCATCAGACACCCACAGCTAAACGTAAACCAAAATAAACCTTATCCAAACTCTCTGCTCAACCTCTCACACAGTGAGAAGCACATGGAAAGTGAAAGGGTTTCAGATAGATTGTAAGGCGCGACTTTGGCTAAATTAAGCTTGTGACAGAGCGCAATGGCATTTTTCTTTTCGTGTGAGCAAATCTCCACAAATGGAGCACTTGATTTATGAGGGTCAAGTCCCTTCCTTCGGCAGCTTAAGACAAACCCGATCACTTCAATACTGTTTGATGAGGATTGAGCCATATAGATTAATGCCGTATCTATCAATTCCATGTCGAAAACAGGAAGTAAACAAAAATTCCAATTCCTTATTGTCCTCAATGTAATTCCTATAAGATTCAAAAATAAGTAGTTGTATTGAAATGGAACGGACCCCAACCCTAGAATCTATGCAGTATCTAAATACAGTATCTTTCTCTATTGTGGATTGATCCATTCTATTGACCTGCATtgactgtactgtgtgtgagGCCAGAGGGGAAGACGACCAGCATTACAACAGGTGACTCGAAAAGGAAGCGAAACTACTGCCGGAAGAACTCCTTGTAAGGCAATAGACTAACTGTCCCCAGACAGACAAACTGGGGCAAAGACAAGAGAGACATTTCCCATGGTGAAACAACATCCGTTTCTGAAGGCCAGTACCACAACTTACACACTCCTGGACCCATATATGGAGATCGTTGCAGAAGAGGACCACAATGAACAATCGCTGTAATCTGAGAGATGAGTGCAGCGAAAAAGTGACCTATAACCACAGTTTCGTAAATCAATGACGATGAATGTTGTgaggttaaaggcccagtgcaatcAAACACTAGCTTTTCCTGTGttctatatatatttccacactatgaggttggaataatactgtgaaattgtgaaaatggtgataatgccattttagtgtaagagctgttcgaaaagccctgaaatttctgcctgttCTGGTGGGATGAAGTTTTGGCCTTCCATTGGTGACATCACCACGCAGTacattggttaatagaccaataagaaagagagttcccaACCTCTATGCCAATAACAGCTCATTTtcagtttcccctccccactcccagATAGTCCTAGCAAAATTTTTGCTTGAGAAATTATCCTTTGCTAAGGAGCTGTttctgtttctttttgaccatttgaaAACAATCTCAGTAAGGTACtttattgttacccagaaataataTTATATTGAGATAAAATgcctgcattggacctttaaaccTTGCCTTATCTAGTTGTTGTATGAGGTTAATGTTACAGATGAGAATTTCAGCAACACATGGCGCCTAGCCTCTCACTGTGAGCTATTTCTGTACCAGAcatatcgagagagagagagagagagagagagagagagagatactgagaggaCTCACAGGATTCTCCCTCCTTTCCAGCTCAGtatctgtctgcgtgtgtgctCTTATGCACTAGCTAATCCACTTAATTCCCTTTAGTCATGAAGTTCAGTACATTTTGTGATTCCATTGTGAATGCGTTGGTGATGTTGGGTATGTTCTTTGCTCCAACAGTGTTGTCCCTTTTGTGGAAAATCCAGATTTCTA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2172995 False 2662 lncRNA 0.39 2 7869603 7872296
TU2172996 True 2664 lncRNA 0.39 2 7869603 7872296

Neighbor

gene id symbol gene type direction distance location
LOC110503654 trad1 coding downstream 123472 7738453 ~ 7746131 (-)
LOC110503655 LOC106580791 coding downstream 131297 7735133 ~ 7738306 (-)
LOC110503640 NA coding downstream 354597 7512805 ~ 7515006 (-)
LOC110503637 LOC106612664 coding downstream 362351 7504941 ~ 7507252 (-)
LOC110503632 LOC106612668 coding downstream 430139 7432304 ~ 7439464 (-)
LOC110503656 LOC106612654 coding upstream 66 7872362 ~ 7875185 (-)
LOC110503659 NA coding upstream 65695 7937991 ~ 7947837 (-)
LOC110503311 LOC106612649 coding upstream 122245 7994541 ~ 8035329 (-)
LOC110503663 tp53i13 coding upstream 191448 8063744 ~ 8069386 (-)
LOC118944074 NA coding upstream 666726 8539022 ~ 8546999 (-)
G1899799 NA non-coding downstream 38399 7830874 ~ 7831204 (-)
G1899793 NA non-coding downstream 45298 7823959 ~ 7824305 (-)
G1899772 NA non-coding downstream 49030 7787168 ~ 7820573 (-)
G1899770 NA non-coding downstream 83361 7785798 ~ 7786242 (-)
G1899760 NA non-coding downstream 87728 7752574 ~ 7781875 (-)
G1899843 NA non-coding upstream 44682 7916978 ~ 7917397 (-)
G1899917 NA non-coding upstream 213063 8085359 ~ 8086215 (-)
G1899977 NA non-coding upstream 287149 8159445 ~ 8199230 (-)
G1900056 NA non-coding upstream 414148 8286444 ~ 8292797 (-)
G1900130 NA non-coding upstream 517987 8390283 ~ 8395234 (-)
LOC110503590 LOC106612705 other downstream 1409538 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1637795 6181377 ~ 6231808 (-)
G1896030 NA other downstream 2000385 5868896 ~ 5869218 (-)
G1894611 NA other downstream 3515667 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 3575125 4289886 ~ 4294714 (-)
G1899875 NA other upstream 174483 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 1698575 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 2133076 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2332924 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 2526746 10399042 ~ 10399857 (-)

Expression


Co-expression Network