G1899977


Basic Information

Item Value
gene id G1899977
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 8159445 ~ 8199230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2173173
TCCAGTGTTAATGTCATCTTTCATATCAATCCAACTTTTAAacacaatatatattttacatatttACAATGTTTACTATTGGcaatatatctatatacacatgaACTTTTGGCCACAGCAGACAATCCACCATCACTTGTCTGGGTTTAGTTCAAGTAGTTGTGTTTCAAGCCAGGTTCATTAAGGGACAAATCCTAACTAACTATTAAGTTGAATTTTGActtagtctcccattgacatcaatgcttGACTAAGTAAACATTTAAGTGGAAGTTAGGATTCGCCCCAAGAGATGTCTAACCGAGGAAACAGATACCCTTACCTCATCTGACATGAACCTGTGGCTCTTTAAAAATCGTTTTCAGAGATAAAGAgcagatgtgtctgtctgtctgaccagaCACAACAAGCTAGTGAACAACCCCGGGTTTTCAACAGAGTACATTCACACtgcctcagaaagtattcacaccccttgacttttcccatgttttgttgtgttacagcctgaatttaaaatggattcaatttagattttttttttttgtcactcgCCTACACACAATGCTCCATAAAGTGTTattgtgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2173173 True 590 lncRNA 0.37 2 8159445 8199230

Neighbor

gene id symbol gene type direction distance location
LOC110503663 tp53i13 coding downstream 90059 8063744 ~ 8069386 (-)
LOC110503311 LOC106612649 coding downstream 124116 7994541 ~ 8035329 (-)
LOC110503659 NA coding downstream 211608 7937991 ~ 7947837 (-)
LOC110503656 LOC106612654 coding downstream 284260 7872362 ~ 7875185 (-)
LOC110503654 trad1 coding downstream 413314 7738453 ~ 7746131 (-)
LOC118944074 NA coding upstream 339792 8539022 ~ 8546999 (-)
LOC110503666 neum coding upstream 1074725 9273955 ~ 9283929 (-)
mpzl3 LOC106612639 coding upstream 1086746 9285976 ~ 9292964 (-)
LOC110503667 LOC106612638 coding upstream 1109820 9309050 ~ 9330335 (-)
LOC110503669 LOC100136515 coding upstream 1139502 9338732 ~ 9346765 (-)
G1899917 NA non-coding downstream 73230 8085359 ~ 8086215 (-)
G1899843 NA non-coding downstream 242048 7916978 ~ 7917397 (-)
G1899822 NA non-coding downstream 287149 7869603 ~ 7872296 (-)
G1899799 NA non-coding downstream 328241 7830874 ~ 7831204 (-)
G1899793 NA non-coding downstream 335140 7823959 ~ 7824305 (-)
G1900056 NA non-coding upstream 87214 8286444 ~ 8292797 (-)
G1900130 NA non-coding upstream 191053 8390283 ~ 8395234 (-)
G1900191 NA non-coding upstream 289446 8488676 ~ 8488916 (-)
G1900351 NA non-coding upstream 553665 8752895 ~ 8753902 (-)
G1900371 NA non-coding upstream 586080 8785310 ~ 8797817 (-)
G1899875 NA other downstream 111471 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 1699380 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1927637 6181377 ~ 6231808 (-)
G1896030 NA other downstream 2290227 5868896 ~ 5869218 (-)
G1894611 NA other downstream 3805509 4353578 ~ 4353936 (-)
LOC110503680 LOC106612628 other upstream 1371641 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 1806142 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2005990 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 2199812 10399042 ~ 10399857 (-)
G1901405 NA other upstream 2417694 10616924 ~ 10617481 (-)

Expression


Co-expression Network