G1900844


Basic Information

Item Value
gene id G1900844
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9516559 ~ 9519131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2174073
ACAATCTTTATTCATTTTACTCAATCAAGCGGTGACTTGCACAGcaaaacacaggcttccagttcagtaaataaaaataaaatctttAATATGTTTCAGTTGATAAAAATCATCAAACTCTGATATATAGATGtacaacacacacatattacagttgattaaaaaaaattaaaacacatTCAACCCCACACTCAGATCCCAAATCAAGTTCAAGTACTGGAAAAATGTATACAGTCTGCACAAAATAACATTCCAAACAGGAGGTCTGTTTACAAATCATTAACTTAAAAGATGCACAGAAATAGCTCCATcgtttcctggttgctaaaattagaATAGTTTGtgtaatttcagtttgtgacaaaacaagcagtcattgtgtagagaaccaccgtaccatctaaaccgctttgaaatatattttacagaatCAAAAATGTTGTatattcagctgtttgaagctggtgtacaaaacccaaagtaaaagaagcaaaaacaaaactttagaacgggaagcatagaaatagcacacatagaacaaaTCCACCGCTTCTTAGACAGGAATGAATGATCTCACATTTCTATAGGAACTAGGTCCGGTCGCCCAAAAACgtacatattgtagctttaaaGCTGCTACGCACAGGATTTCTTTGAATTTatgcattgtaatttcagaaaaaTGTCCATAATATATCTGGCGCTAATAGTGGAATGCAAGTGTTTCACAGTATCACTTAGCCGCTAGTGTTGGGATTGGCTGCGATATTTGCATACTGATTTCTCCCACCGGAACGAAATCTGTTGTCAAAATGGGAAAGCTGTTCTGAATTCGTGGCTGTGTTATCCAGTGGAAATGATTCATTTCCTAGTTGCAAAAATTCTACACTGTTCGCTCAATTTCAGTTTGCGAGAAAACAAGCACGGAATAGTGTCggtaatcattgtaccatctaaaatcgtcactatatatatatatatatatatatatatattatttttttacagctgtttgaagctgttgGACCAAAACCAAAAGCAACTTGGTCTAACATCCAAAGGTCACCCAGTCAAATTGACAATTGTGGGaatcatttgagtcaacatggaacattatccctgtggaatgcttgacaccttgtagagtccatgccctgacaaatcgactgttctgagggcaactcaatattaggaaggtgtttcatGTTTCGTACACAGTATTAGACATTTCCTGAAATTACAATGCAAACATTTGAACAAATCCTATtaataaaataaatcatttaaaaagcAGCCAAAATCTGAAGAGCACTCCATCACCCACACACCGTCACACATCCCCAAAACCATTTACATTTTAaaactcattcacacacacacacacacaccgtcacacatCCCCAAAAccatttacattttaaaacacATTCACCCACACACCGTCACACATCCCCAAAAccatttacattttaaaacacATTCACCCACACACCGTCACACATCCCCAAAAccatttacattttaaaacacATTCACTCTCACACCGTCACACATCCCCAAAACCATTTACATTTTAAaactcattcactcacacactgtcacacatgcCCAAAAccatttacattttaaaacacATTCACCCACACACCGTCACACATCCCCAAAAccatttacattttaaaacacATTCACTCTCACACCGTCACACATCCCCAAAAccatttacattttaaaacacATTCACTCTCACACCGTCACACATCCCCAAAAccatttacattttaaaacacATTCACCCACACACCGTCACACATCCCCAAAAccatttacattttaaaacacATTCACACCCACACACCGTCACACATCCCCAAAAccatttacattttaaaacacattcacacacacagcattgTAATGCCTTCCCATGGTGCACACCTAATAAACTTTGGAAGACTGACTTAAACTGCAAGGGCCGGTTACGGACCCAGACTATAACCTAATCCTGGGCTAAAAAGCATTTCCAACGGATATTCGTAATTGAtcttgctttttagtccaggataaTCATTGTCCAGGAAACCACCCCAGGAGTGCTGCTCTGTCTGGTTGTCCAGCATGCCGTCTAATCCCACAGTAAAAGACCCAGGTAAGGGACTGAACCAAACTAGTGATACACACGTCAACCCAAAGACCAGGCCAAACTACCACCTCTATAGCACTGCTAGGTGAGACCGGAGGGTCCTGAGAGATCCAGAGGGTTTAGGTTGCTCCCCCGCAGTACACTTACTCACATACGCTTGGGTCTCTGCAACGCTGATAAAAGGCCACAGGCTTGGGTCTCTGCAACGCTGATAAAAGGCCACAGGCTTG

Function

NR:

description
FGF2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2174073 True 2373 lncRNA 0.39 2 9516559 9519131

Neighbor

gene id symbol gene type direction distance location
LOC110503673 cep164 coding downstream 58702 9439390 ~ 9457857 (-)
LOC110503671 LOC106612637 coding downstream 115170 9357011 ~ 9401389 (-)
LOC110503672 tmm25 coding downstream 160558 9347752 ~ 9356001 (-)
LOC110503669 LOC100136515 coding downstream 169794 9338732 ~ 9346765 (-)
LOC110503667 LOC106612638 coding downstream 186224 9309050 ~ 9330335 (-)
LOC110503678 LOC106612633 coding upstream 799 9519930 ~ 9525556 (-)
cbln18 LOC106612737 coding upstream 14471 9533602 ~ 9536466 (-)
cbln20 LOC106612736 coding upstream 25674 9544805 ~ 9546072 (-)
LOC110503680 LOC106612628 coding upstream 51736 9570867 ~ 9579939 (-)
LOC110503681 LOC106612627 coding upstream 68066 9587197 ~ 9593083 (-)
G1900807 NA non-coding downstream 8270 9507692 ~ 9508289 (-)
G1900818 NA non-coding downstream 40981 9475367 ~ 9475578 (-)
G1900816 NA non-coding downstream 44085 9471700 ~ 9472474 (-)
G1900715 NA non-coding downstream 45462 9468967 ~ 9471097 (-)
G1900815 NA non-coding downstream 47917 9468388 ~ 9468642 (-)
G1900855 NA non-coding upstream 9549 9528680 ~ 9528896 (-)
G1900872 NA non-coding upstream 40035 9559166 ~ 9559405 (-)
G1900875 NA non-coding upstream 47215 9566346 ~ 9566751 (-)
G1900884 NA non-coding upstream 76451 9595582 ~ 9595911 (-)
G1900901 NA non-coding upstream 94927 9614058 ~ 9614979 (-)
G1899875 NA other downstream 1468585 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3056494 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3284751 6181377 ~ 6231808 (-)
G1896030 NA other downstream 3647341 5868896 ~ 5869218 (-)
G1894611 NA other downstream 5162623 4353578 ~ 4353936 (-)
G1901072 LOC107388308 other upstream 486241 10005372 ~ 10012354 (-)
G1901206 NA other upstream 686089 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 879911 10399042 ~ 10399857 (-)
G1901405 NA other upstream 1097793 10616924 ~ 10617481 (-)

Expression


Co-expression Network