G1900903


Basic Information

Item Value
gene id G1900903
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9617548 ~ 9629252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2174140
TTTTTacgtttttaaacaactaattgactgacGTCAGTTAAATGATTTGAATTTAATTTCGTccctttctgtgagctcaatgcgcacattgcgctacagtttgtgcagaaatagATGCCCGAACTGTGCAATGTaatagggagttgtagtttccaaaagGCCAATGTTCTACATAGTGCAGAAAACGTGAttattaactacaatgaccataatcgaTTGCGTGGTTACTTGTCTGGTCTGATTCTTTTACGCCTACTATGTAAGAGAGAATAATGCGAGATCAAGAGGGGATACGTACTGTAGAGAGCAGTTGCTTTGCGAggggtgtctgtactttactctttatatttttgacaacttttacttcactacattcccaaagaaaattatgtacttttttttcatacattttccctgacaaccaaaagtacttattacattttgaatgcttagcaggacaataaaatctttaattcacacacttatcaaaataacatccctggtcatccctgcagcctcttatctggaggactcatgaaacatacagtggggcaaaaaactatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcttgtaattttcatcataggtacacttcaactatgacagcaTATTTTATTTTGACCCCCATTTATGAAGCTCACCCTTCCaggaaacATATGTGTGTTCCCCACACAACGTAGAACAGTTATAACAATCACATATGTGTGGATTATGTCGGGATTTAGGACTAGCAGAGCATATATATAAAGCAAAAAGCACGAGGATGACAGTTGAGAAAATGTTGCATATACATTTTTTAGGATCTCAATATTGTGTTATATGTTGGTAGGTCTAATAAACaaatatattgtatacattgatAATATTATTTTGTCAGAAATTCAAGCCGTTGATACAGTTGTGTAATCTATCGCCCGCCCTGCTGATCGTGCTCTATCTGAACTACATTAAGCTTTCATTATTTTGCATCAAATATTTATGGACCTTAAATTATTATAGAATACACAATATCTCACCCTTTAATGACAGGAAAATGTCCTTTCCATCCATCACCACGGTCTGTCACAAAGAAATGTAATGTCTgaaaaaaacatgtattattttatagtCTTTCCTACAATGGTATGTTATAAAGTTTGTAATAATTTACAACTGCAGGC
>TU2174139
TTTTTacgtttttaaacaactaattgactgacGTCAGTTAAATGATTTGAATTTAATTTCGTccctttctgtgagctcaatgcgcacattgcgctacagtttgtgcagaaatagATGCCCGAACTGTGCAATGTaatagggagttgtagtttccaaaagGCCAATGTTCTACATAGTGCAGAAAACGTGAttattaactacaatgaccataatcgaTTGCGTGGTTACTTGTCTGGTCTGATTCTTTTACGCCTACTATGTAAGAGAGAATAATGCGAGATCAAGAGGGGATACGTACTGTAGAGAGCAGTTGCTTTGCGAggggtgtctgtactttactctttatatttttgacaacttttacttcactacattcccaaagaaaattatgtacttttttttcatacattttccctgacaaccaaaagtacttattacattttgaatgcttagcaggacaataaaatctttaattcacacacttatcaaaataacatccctggtcatccctgcagcctcttatctggaggactcatgaaacatacagtggggcaaaaaactatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcttgtaattttcatcataggtacacttcaactatgacagcaTATTTTATTTTGACCCCCATTTATGAAGCTCACCCTTCCaggaaacATATGTGTGTTCCCCACACAACGTAGAACAGTTATAACAATCACATATGTGTGGATTATGTCGGGATTTAGGACTAGCAGAGCATATATATAAAGCAAAAAGCACGAGGATGACAGTTGAGAAAATGTTGCATATACATTTTTTAGGATCTCAATATTGTGTTATATGTTGGTAGGTCTAATAAACaaatatattgtatacattgatAATATTATTTTGTCAGAAATTCAAGCCGTTGATACAGTTGTGTAATCTATCGCCCGCCCTGCTGATCGTGCTCTATCTGAACTACATTAAGCTTTCATTATTTTGCATCAAATATTTATGGACCTTAAATTATTATAGAATACACAATATCTCACCCTTTAATGACAGGAAAATGTCCTTTCCATCCATCACCACGGTCTGTCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2174140 False 1205 lncRNA 0.35 3 9617548 9629252
TU2174139 True 1111 lncRNA 0.36 2 9623537 9629252

Neighbor

gene id symbol gene type direction distance location
LOC110503684 LOC106592295 coding downstream 9302 9606325 ~ 9608246 (-)
LOC110503681 LOC106612627 coding downstream 24465 9587197 ~ 9593083 (-)
LOC110503680 LOC106612628 coding downstream 37609 9570867 ~ 9579939 (-)
cbln20 LOC106612736 coding downstream 71476 9544805 ~ 9546072 (-)
cbln18 LOC106612737 coding downstream 81082 9533602 ~ 9536466 (-)
LOC110503686 LOC106592295 coding upstream 23318 9652570 ~ 9654648 (-)
dpf1 dpf1 coding upstream 28719 9657971 ~ 9730313 (-)
LOC110503314 LOC106612624 coding upstream 142172 9771424 ~ 9846389 (-)
LOC110503688 LOC106612623 coding upstream 218970 9848222 ~ 9862581 (-)
LOC110503315 NA coding upstream 250845 9880097 ~ 9887061 (-)
G1900901 NA non-coding downstream 2569 9614058 ~ 9614979 (-)
G1900884 NA non-coding downstream 21637 9595582 ~ 9595911 (-)
G1900875 NA non-coding downstream 50797 9566346 ~ 9566751 (-)
G1900872 NA non-coding downstream 58143 9559166 ~ 9559405 (-)
G1900855 NA non-coding downstream 88652 9528680 ~ 9528896 (-)
G1900922 NA non-coding upstream 53176 9682428 ~ 9697449 (-)
G1900945 NA non-coding upstream 102442 9731694 ~ 9731937 (-)
G1900949 NA non-coding upstream 105708 9734960 ~ 9735248 (-)
G1900970 NA non-coding upstream 128708 9757960 ~ 9823033 (-)
G1901047 NA non-coding upstream 259631 9888883 ~ 9943437 (-)
G1899875 NA other downstream 1569574 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3157483 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3385740 6181377 ~ 6231808 (-)
G1896030 NA other downstream 3748330 5868896 ~ 5869218 (-)
G1901072 LOC107388308 other upstream 376120 10005372 ~ 10012354 (-)
G1901206 NA other upstream 575968 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 769790 10399042 ~ 10399857 (-)
G1901405 NA other upstream 987672 10616924 ~ 10617481 (-)
G1901516 NA other upstream 1224579 10853831 ~ 10856437 (-)

Expression


Co-expression Network