G1901087


Basic Information

Item Value
gene id G1901087
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9984308 ~ 9985894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2174348
TGGTAAGAGAGCGAGACCTAGAAGCCCTGACGAGCAGGTGCACGTGAGTGCGCGTGTAGGCCTACTCTGACACGCGCTCTTTGTTTTGCTCCTCAGAAAGTATGTAACACGGAGTTTTAGTCTTTAACCATCGACTGTTGCGCTTCTTGTCATATTTACAAACAATAGGCTAATTCGATCGTCAGCTTTCGATATTATCTATATGAAATGTAAAGACAAAAACCATACCTGATAGCCTAGTTGAGCAGGTGATGTGGCCTCTTGAAACACATATTCCAAATTGGACGGTTAAAACAACACACATACTCACGCTGTGCGCACCGGCAGATGCCGCAGGTAAAGACGTTTATTTGAGATTTATAATGTTCAACATGCGggtatagtctctctctctttatatctccgCCGTGGCTTTACAGATTCAGATAAACCCCTTATACAGTTTGGGCAGTACATGGGTCTGTGTGGATTTTAAACTATAAGAAATCCGATTCAATTAACAAGAGCAGAGAATCGGCTTTGGACACTGTGAAATTGTCTGGCCACAGGGATAGGATGAGACACAGGCCAACAATCGCAGGATGGACAACAACTCATGGCATTTAAATAAATCACCAAGACTTTACAGGCCATTTGCATCACCGGGGTAGATTTCTACAACGAATAAAAACACTGGACAAAGTAACCTAAAGCAACGCAATGTTCTCAGTTCCAACTCAACAAGTGGCTTTGCGGTTTATTATAACTTTTAGTCCAATCTTAATGCTGTCTTCAACATTGTTTTACACCACAACCGACGAAACTATCAATCAAAACATTATGGTCATGATTTACAATTAAATGCGCTAAAGGGACATGCCTAACGAGTACAACTTAAATAGACTTTAGCAAGTTTGCCTATAATAATTCACCCACTTATTTGGAATGAAATGCATCAAGATACTCTAAAAATGTATGGCTTTAAATTGCAGTCATGACCATAATGTTGATAGCATGTTACCATTTTGATAGACAATAATAAGATGCGCTGTTATCCCTATTAATGataatattacaacaaataacatcataccattattattattaatatcatAATTATAAGTattaatattgttattattattactacagaAATATGAATAGTAAAAAAGGGAGTATGTTGGGGATCAGTAGGGGGTTTAATAGAGAACAACGCGGCCTTTATGTAGTTTTAATCCTGCTTGTATACCCACCCCACCCCTTCCATCCCTTGAATTTCCTCACTCAGACTACATCGCCCAATTACATCTGTGTTTTTAAAGCGGTGTAAAATGTACGAAATGTACTCTTCTGATGGCTATCAAGCTTTCCCCGACAGTGCAGCACTGTTATTCAACTCCTAAAGGTCCTCTTCGGCTCCAGGAAAATGACTTCAACAGAGTTGCTAGCTTGTCCTTTTGTCTTTAACAATTCAAAACGGACTCTTATAACACACCAAACGTATAGGCTACTCAGAAATGATGAGTGGCACATCTATTTAATTTCACGAATGAGTGTAACATTTTATGTTTTGGTTAAGTGGATTGGTAGGCTATGCAGTTACTGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2174348 True 1587 lncRNA 0.39 1 9984308 9985894

Neighbor

gene id symbol gene type direction distance location
LOC110503696 LOC106612616 coding downstream 266 9979013 ~ 9984042 (-)
LOC110503694 NA coding downstream 42540 9924311 ~ 9941768 (-)
LOC110503691 LOC106612619 coding downstream 86370 9892221 ~ 9897938 (-)
LOC110503315 NA coding downstream 97247 9880097 ~ 9887061 (-)
LOC110503688 LOC106612623 coding downstream 121727 9848222 ~ 9862581 (-)
LOC110503700 LOC107388308 coding upstream 19446 10005340 ~ 10008987 (-)
LOC110503698 LOC107388308 coding upstream 23467 10009361 ~ 10012404 (-)
LOC110503704 LOC106612609 coding upstream 118672 10104566 ~ 10114248 (-)
LOC110503316 prss16 coding upstream 143998 10129892 ~ 10139994 (-)
LOC110503705 hnrnpl coding upstream 157134 10143028 ~ 10153094 (-)
G1901082 NA non-coding downstream 10882 9972794 ~ 9973426 (-)
G1901047 NA non-coding downstream 40871 9888883 ~ 9943437 (-)
G1901071 NA non-coding downstream 46856 9932534 ~ 9937452 (-)
G1900968 NA non-coding downstream 61630 9921871 ~ 9922678 (-)
G1900970 NA non-coding downstream 161275 9757960 ~ 9823033 (-)
G1901088 NA non-coding upstream 248 9986142 ~ 9986610 (-)
G1901100 NA non-coding upstream 40959 10026853 ~ 10027069 (-)
G1901126 NA non-coding upstream 86344 10072238 ~ 10072472 (-)
G1901128 NA non-coding upstream 92997 10078891 ~ 10079273 (-)
G1901129 NA non-coding upstream 93448 10079342 ~ 10079572 (-)
LOC110503680 LOC106612628 other downstream 410159 9570867 ~ 9579939 (-)
G1899875 NA other downstream 1936334 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3524243 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3752500 6181377 ~ 6231808 (-)
G1896030 NA other downstream 4115090 5868896 ~ 5869218 (-)
G1901072 LOC107388308 other upstream 19478 10005372 ~ 10012354 (-)
G1901206 NA other upstream 219326 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 413148 10399042 ~ 10399857 (-)
G1901405 NA other upstream 631030 10616924 ~ 10617481 (-)
G1901516 NA other upstream 867937 10853831 ~ 10856437 (-)

Expression


Co-expression Network