G1901072 (LOC107388308)


Basic Information

Item Value
gene id G1901072
gene name LOC107388308
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10005372 ~ 10012354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2174329
TTTTCCCGCTGGACGGTTGTTCCCATTGTGGATACGAGGAAGAAAATACTGACACcgccagacaagctaaacacttcTCACATTCTTTTTAACCACTTTTGGTGTAGGTGATTTGTAGGAGCCATGGCCCGTACCAAGCAGACAGCCCGTAAATCTACTGGAGGCAAAGCCCCACGTAAGCAGCTGGCCACCAAAGCTGCCCGCAAGAGTGCCCCTTCTACTGGTGGGGTCAAGAAGCCCCATCGTTACAGACCTGGTACTGTGGCCCTGCGTGAGATCCGTCGTTACCagaagtccactgagctgctgatcCGCAAGCTGCCATTCCAGCGCCTGGTGAGAGAAATTGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTGCAGCCATTGGGGCCCTGCAGGAGGCCAGCGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGTCGTATCCGTGGGGAGCGTGCTTAGACGCCTACCTGAtttacctctcctcccctcaacagtctgccctccccttccctccccctctcctcttatgTTGGTAGTGATTTAGAGAAACAATGATTATGATAAGAATAATGTGTATAGTGGTGTTTTCTTAGTACTCTCGGCAGCAGACTATTATAGGGTACTCTTTTGTGCATGTACCTGCTTGTTGCTGGTCAGATCccccaccatcacaccatcaAATCAGATGTTCCATTGTCATGATGCCGTGTGGAGAGATCAGATAAAACAAGACAGGGAATCTGACATAGGTTGTGGTCGCAGGAGGATGGGGTTAGGTTTTTGTCTGCAGAGTGGAGTACCTCTTTCTCTGCAGGGTGCTAGAACAACTGCCCTAGTCCCCTTCCTCCTTCCCCACTCTTCCAGTGAAATAGAGACTGAGCTGGTATCTTTCATGGCAACACATGAACGAGagtccagcccccccccccccccccccccccccccccttgtgtgTGAGCGTGTAGATTCTGATCAGCACAGCAAATTGTATACAATTCAAAAACATCTCTGGAGCAATTGTTTATTACAATATTGATCATTATCATGGGTATTATTTTTTATGCTTACGCACATATTTCATAGTGGATAAAAGATTTGTGAATGAAATGGAGGTggattcaaataaaatgttgtACAGAAAACAAAATTGACGTAAGCTATCGTTTCTACTGGTGTTGAAGCTTGTGATTTGTTTTAGCTGTCAAAGGGGATTCTAGATTGTTCATTCTCATTTCATCGCCTCTTATATTGGCACTATTTTCCCTTTGTCTTTGAATTCTCAAATTTGGCTTCTGCGATAAATAATTGGAGACAGCATTTTAAGGCTTTTGCAAACAAATAGTGAATCCAGTGTTCTTTGTGATCACTCCTGTGGGGCCTTGTTGTGAGGTTTATGGAGCTGGTGGTCAATGCTCTCTTGCAAACCAAAAACAGTCTAATTGGTAAAGTGATCATGTATGTTAATGTTATGTGAGCTGTAATTGGAATGGTCACGGATATTTAGACCTCCCCCTTTGCTTCTCAGGTTGTGTCACCCTTTTAACTTAAAATCATTTTTGTTTCTTAATTGGAATTTGAAATGTTAAGATgtttaaataaaacaatgtttGTAATTTC
>TU2174330
GCCATTTTAACCCAATATAGGACTCCATTCTGTTGTGGGAACAACGCAATAAATAAGGACACGAGACCAGTTTCACATTTAAACATTAGCTGTTGTATCAAAGGTAATTTGTAGGAGCCATGGCCCGTACCAAGCAGACAGCCCGTAAATCTACTGGAGGCAAAGCCCCACGTAAGCAGCTGGCCACCAAAGCTGCCCGCAAGAGTGCCCCTTCTACTGGTGGGGTCAAGAAGCCCCATCGCTACAGACCTGGTACTGTGGCCCTGCGTGAGATCCGTAGGTACCagaagtccactgagctgctgatcCGCAAGCTGCCCTTCCAGCGCCTGGTGAGAGAAATCGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTGCAGCTATTGGAGCCCTGCAGGAGGCCAGCGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGTCGTATCCGTGGGGAGCGTGCTTAGACGCCTACCTGAtttacctctcctcccctcaacagtctgccctccccttccctccccctctcctcttatgTTGGTAGTGATTTAGAGAAACAATGATTATGATAAGAATAATGTGTATAGTGGTGTTTTCTTAGTACTCTCGGCAGCAGACTATTATAGGGTACTCTTTTGTGCATGTACCTGCTTGTTGCTGGTCAGATCccccaccatcacaccatcaAATCAGATGTTCCATTGTCATGATGCCGTGTGGAGAGATCAGATAAAACAAGACAGGGAATCTGACATAGGTTGTGGTCGCAGGAGGATGGGGTTAGGTTTTTGTCTGCAGAGTGGAGTACCTCTTTCTCTGCAGGGTGCTAGAACAACTGCCCTAGTCCCCTTCCTCCTTCCCCACTCTTCCAGTGAAATAGAGACTGAGCTGGTATCTTTCATGGCAACACATGAACGAGagtccagcccccccccccccccccccccccccccccttgtgtgTGAGCGTGTAGATTCTGATCAGCACAGCAAATTGTATACAATTCAAAAACATCTCTGGAGCAATTGTTTATTACAATATTGATCATTATCATGGGTATTATTTTTTATGCTTACGCACATATTTCATAGTGGATAAAAGATTTGTGAATGAAATGGAGGTggattcaaataaaatgttgtACAGAAAACAAAATTGACGTAAGCTATCGTTTCTACTGGTGTTGAAGCTTGTGATTTGTTTTAGCTGTCAAAGGGGATTCTAGATTGTTCATTCTCATTTCATCGCCTCTTATATTGGCACTATTTTCCCTTTGTCTTTGAATTCTCAAATTTGGCTTCTGCGATAAATAATTGGAGACAGCATTTTAAGGCTTTTGCAAACAAATAGTGAATCCAGTGTTCTTTGTGATCACTCCTGTGGGGCCTTGTTGTGAGGTTTATGGAGCTGGTGGTCAATGCTCTCTTGCAAACCAAAAACAGTCTAATTGGTAAAGTGATCATGTATGTTAATGTTATGTGAGCTGTAATTGGAATGGTCACGGATATTTAGACCTCCCCCTTTGCTTCTCAGGTTGTGTCACCCTTTTAACTTAAAATCATTTTTGTTTCTTAATTGGAATTTGAAATGTTAAGATgtttaaataaaacaatgtttGTAATTTC

Function

NR:

description
PREDICTED: histone H3.3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2174329 False 1692 TUCP 0.46 4 10005372 10008340
TU2174330 True 1688 TUCP 0.45 4 10005372 10012354

Neighbor

gene id symbol gene type direction distance location
LOC110503696 LOC106612616 coding downstream 21330 9979013 ~ 9984042 (-)
LOC110503694 NA coding downstream 63604 9924311 ~ 9941768 (-)
LOC110503691 LOC106612619 coding downstream 107434 9892221 ~ 9897938 (-)
LOC110503315 NA coding downstream 118311 9880097 ~ 9887061 (-)
LOC110503688 LOC106612623 coding downstream 142791 9848222 ~ 9862581 (-)
LOC110503704 LOC106612609 coding upstream 92212 10104566 ~ 10114248 (-)
LOC110503316 prss16 coding upstream 117538 10129892 ~ 10139994 (-)
LOC110503705 hnrnpl coding upstream 130674 10143028 ~ 10153094 (-)
LOC110503706 LOC105026808 coding upstream 139936 10152290 ~ 10159142 (-)
LOC110503317 LOC106612604 coding upstream 148540 10160894 ~ 10263430 (-)
G1901088 NA non-coding downstream 18762 9986142 ~ 9986610 (-)
G1901087 NA non-coding downstream 19478 9984308 ~ 9985894 (-)
G1901082 NA non-coding downstream 31946 9972794 ~ 9973426 (-)
G1901047 NA non-coding downstream 61935 9888883 ~ 9943437 (-)
G1901071 NA non-coding downstream 67920 9932534 ~ 9937452 (-)
G1901100 NA non-coding upstream 14499 10026853 ~ 10027069 (-)
G1901126 NA non-coding upstream 59884 10072238 ~ 10072472 (-)
G1901128 NA non-coding upstream 66537 10078891 ~ 10079273 (-)
G1901129 NA non-coding upstream 66988 10079342 ~ 10079572 (-)
G1901131 NA non-coding upstream 68319 10080673 ~ 10080949 (-)
LOC110503680 LOC106612628 other downstream 431223 9570867 ~ 9579939 (-)
G1899875 NA other downstream 1957398 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3545307 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3773564 6181377 ~ 6231808 (-)
G1896030 NA other downstream 4136154 5868896 ~ 5869218 (-)
G1901206 NA other upstream 192866 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 386688 10399042 ~ 10399857 (-)
G1901405 NA other upstream 604570 10616924 ~ 10617481 (-)
G1901516 NA other upstream 841477 10853831 ~ 10856437 (-)
LOC110503734 rnf7 other upstream 903200 10915471 ~ 10918092 (-)

Expression


Co-expression Network