G1901147 (LOC106612610)


Basic Information

Item Value
gene id G1901147
gene name LOC106612610
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10096286 ~ 10100566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2174412
tacaaacattattgggcacagaaaacagcacaaagggcaagaaggttgagacaacaatacatcacgcaaagcagccacaactgtcagtaagagtgtccatgatggagtcttTGAATGACGAGATTGacataaaactgtccagtttgagtgtttgttgcagctcgtgccagtcgctagctgcagcgaactgaaaagacgagcgacccagggatgtgtgtgctttggggacctttaacagaatgtgactggcagaacgggtgttgtatgtggaggatgagggctgcagtagatatctcagataggggggagttaggcctaagagggttttataaataagcatcaaccagtgggtcttgcgacgggcatacagagatgaccagtttacagaggattatagagtgcagtgatgatataaggagcattggtggcaaatctaatggccgaatggtaaagaatggaagatctgtcttgctgaaaaagcttataaccagaaaggttagtattcagtattcagtattcaaaacactcttccttaaccccgtctcagtaatgaccaacatctggattggagctgtgaacccacactttcaattgatccattttagctAATAAGCTTCTAGAGTTAAcctgcagaaaacccaggctttaatgagagcagaaatcagtgaagcagatatcagagcacaagtcagaattggggcctGAAACAATAGAtaggccagggtgtacatgcacatttccagatatcatcagtaATACAATCAAGACACGGCAGAGGatagggagagctctgcagtgttgatttatgacatctgaatgtgcatcagatggcaataAGATCATATTgcacagcaatttcatcaggtaacatgaatacaaagctggCGAGAGGTGgctagaataggatgggaggccaaaagtctgtgtaaccaatagagagtcagagtcccgagtgtgggaacaaacatagtctgtcccacggttgggtaaagaAAGTTTGTAGTCAACAAAGTATGCAGAGGAGTCATGAGTCAAATAGCaaaatagcaaaatgcacaagaaaataataaaatatataacgacttgggtttagccattgtaagttcagagtcactcgccccaacagtgcCTGTGTGCTGGAGGTGAGTGAAAGctcaggagagaggggggagtgtggtggggatacctgtaacagacagagggAGTTAGGCCAGGGCAGACAGAGGGAGttaggccagggcagacggtgaacagattgccaggtggaatccaagcagcagtgcagcaggcaacagGAATAGGTGTCACAaccacttgggagaagcttttatttctggaggcagatcTCTTGTAGAAAATCCCAGTGACTGGTCTCTGAACAGCAGGAGGTGGCTTCAGAGGATGCTTCAAAGACTCCTGCAACTTGTTGGGCCCAAAGGCCTCGACACCTTTGCCTTCACACCTTAGTGCTAATTGAAtttgtatctggtctgtcctaGCAAGCCTGGGAGCCTTAACTCAGCTATCCGTAcccataaaataaaatatatcactgtaatgtactttatttttatttttcttcttggctttcaaaatagcatcagaccaaacactactcactcagttccaggttggatggtgtcctcaggtctctgCTGTTTGTTTGCTAGAGCACCCTCTGTATAGCTTGGAAACAGGAAACCTTGCTAGCAGTAACCTATCCGGTTAATTTTGGCCAAAATTAGGTTGCaggtttggagttttgatctGGAGCGAAGGCCatgctgtggagggtagcatCTGTGGAGTGCCTCATGGACGCTGCGGAGACTAACCTGAGTCTTGTCTCCCCTTCTGAGGTGAGGCCTGGAGTTGTACAGCTGGGGGTCCTTGGCCCTCCGCTCTgctgccctcctcctccctcaccgcTACCACAACCTCTGAGATTGTGTGCAGTGCCTTTGCCAGAACACTAGAGGGCGCCGGTGGGTCATCAGTTACACTTCCTGTGCCAGTTTCCGGCTCTGCATCACTGGAGTATTCCTTGCCTTTCTCGCCGTGCCCAGGTCTCCGGAGGGTCCTCCTATTCGTGCTGCGTCGTGATTGGTTGCAGTGCAGGGTGCGCCTGCGTTGCCATTTGCTCAGGGATTGTTGGGCCTCGGTGCTGAGCTGGCGTGTGGCGAGACGAGGGCGGAAGCTGCTGATGTAGAAGAGAGAGGCGTACAGGGACGTCAAGT

Function

NR:

description
ras and Rab interactor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2174412 True 2237 lncRNA 0.48 2 10096286 10100566
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110503698 LOC107388308 coding downstream 83882 10009361 ~ 10012404 (-)
LOC110503700 LOC107388308 coding downstream 87299 10005340 ~ 10008987 (-)
LOC110503696 LOC106612616 coding downstream 112244 9979013 ~ 9984042 (-)
LOC110503694 NA coding downstream 154518 9924311 ~ 9941768 (-)
LOC110503691 LOC106612619 coding downstream 198348 9892221 ~ 9897938 (-)
LOC110503704 LOC106612609 coding upstream 4000 10104566 ~ 10114248 (-)
LOC110503316 prss16 coding upstream 29326 10129892 ~ 10139994 (-)
LOC110503705 hnrnpl coding upstream 42462 10143028 ~ 10153094 (-)
LOC110503706 LOC105026808 coding upstream 51724 10152290 ~ 10159142 (-)
LOC110503317 LOC106612604 coding upstream 60328 10160894 ~ 10263430 (-)
G1901146 NA non-coding downstream 3389 10092560 ~ 10092897 (-)
G1901144 LOC106612610 non-coding downstream 5029 10090983 ~ 10091257 (-)
G1901142 NA non-coding downstream 6850 10089222 ~ 10089436 (-)
G1901139 NA non-coding downstream 9464 10086616 ~ 10086822 (-)
G1901138 NA non-coding downstream 10036 10085992 ~ 10086250 (-)
G1901162 NA non-coding upstream 28364 10128930 ~ 10129406 (-)
G1901212 NA non-coding upstream 118857 10219423 ~ 10223013 (-)
G1901251 NA non-coding upstream 175275 10275841 ~ 10276160 (-)
G1901072 LOC107388308 other downstream 83932 10005372 ~ 10012354 (-)
LOC110503680 LOC106612628 other downstream 522137 9570867 ~ 9579939 (-)
G1899875 NA other downstream 2048312 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3636221 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3864478 6181377 ~ 6231808 (-)
G1901206 NA other upstream 104654 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 298476 10399042 ~ 10399857 (-)
G1901405 NA other upstream 516358 10616924 ~ 10617481 (-)
G1901516 NA other upstream 753265 10853831 ~ 10856437 (-)
LOC110503734 rnf7 other upstream 814988 10915471 ~ 10918092 (-)

Expression

G1901147(LOC106612610) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 4.
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G1901147(LOC106612610) Expression in each Bioproject

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G1901147(LOC106612610) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network