G1901388


Basic Information

Item Value
gene id G1901388
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10587103 ~ 10587571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2174699
GTTATTACTCCAACTTTGTGAAAGTAAACTGACACATTTTCATttttgtcaaaaacaactttatatcgaaAGCATATTGCCTAAAAGGGTgatcggggatttctattggagaatcAGTTTCTGCCCATCTTCATACTGTATCGTCTTTAGTAATGCTGTCAAATATAACATGCTACAAAAACAATTGTAAAAGAAAAACATCAGAAGCTATGACAAAGGGCTATTCTTACTGAATATCGTGCTAGGTAGTAGGGGCACCAGCCTTTCCTCCGCCCAAAGTCCTTCATTATCATCCAGGTTGTAGACTCCAGCTGGGAGGGGCACCTGCTTTCCCATAGCGTCAAACTCCTAAAGCAGAtcgtcagacagacagaggcatggAAGTCTCCAGATCACAGTTGGGCGCGGATGTATGACGCTGTCAGGCTGTGACATTTCCCATCCATCTCCTTCCCAAAGCGTAACGAGC

Function

NR:

description
TFIIH basal transcription factor complex helicase XPD subunit isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2174699 True 469 lncRNA 0.43 1 10587103 10587571

Neighbor

gene id symbol gene type direction distance location
LOC110503717 LOC106612594 coding downstream 41457 10523008 ~ 10545646 (-)
LOC110503715 LOC106612595 coding downstream 92039 10477955 ~ 10495064 (-)
LOC110503714 LOC106612596 coding downstream 120304 10438594 ~ 10466799 (-)
zgc:152863 LOC106612597 coding downstream 149619 10431279 ~ 10437484 (-)
if3c LOC106612601 coding downstream 216609 10367039 ~ 10370494 (-)
LOC110503721 LOC106612590 coding upstream 9004 10596575 ~ 10605378 (-)
LOC110503722 LOC106612588 coding upstream 49127 10636698 ~ 10701524 (-)
LOC110503727 LOC106612579 coding upstream 123763 10711334 ~ 10720111 (-)
LOC110503726 LOC106612578 coding upstream 138717 10726288 ~ 10730411 (-)
LOC110503728 LOC106612577 coding upstream 178321 10765892 ~ 10809404 (-)
G1901170 NA non-coding downstream 2574 10584164 ~ 10584529 (-)
G1901380 NA non-coding downstream 22052 10564823 ~ 10565051 (-)
G1901337 NA non-coding downstream 23960 10488619 ~ 10563143 (-)
G1901392 NA non-coding upstream 4515 10592086 ~ 10592969 (-)
G1901448 NA non-coding upstream 133328 10720899 ~ 10721225 (-)
G1901492 NA non-coding upstream 223845 10811416 ~ 10812071 (-)
G1901501 NA non-coding upstream 233442 10821013 ~ 10821392 (-)
G1901532 LOC106612575 non-coding upstream 265027 10852598 ~ 10853532 (-)
G1901302 LOC106612600 other downstream 187246 10399042 ~ 10399857 (-)
G1901206 NA other downstream 381155 10205220 ~ 10205948 (-)
G1901072 LOC107388308 other downstream 574749 10005372 ~ 10012354 (-)
LOC110503680 LOC106612628 other downstream 1012954 9570867 ~ 9579939 (-)
G1899875 NA other downstream 2539129 8046779 ~ 8047974 (-)
G1901405 NA other upstream 29353 10616924 ~ 10617481 (-)
G1901516 NA other upstream 266260 10853831 ~ 10856437 (-)
LOC110503734 rnf7 other upstream 327983 10915471 ~ 10918092 (-)
G1901922 LOC100380637 other upstream 603104 11190675 ~ 11192759 (-)
LOC110503748 LOC106612568 other upstream 865833 11453367 ~ 11478299 (-)

Expression


Co-expression Network