G1901922 (LOC100380637)


Basic Information

Item Value
gene id G1901922
gene name LOC100380637
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 11190675 ~ 11192759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2175311
TGGGTTTGTGTTCACTTCAATCTTTATTGTTACATCATTGAACATAGATAATACTCATGTGGTTCTTCTCTTTTAGAAAAAGGACAATGATCCTAGTTGGCTAAACATCAGTCAAGTGGAGAGCTCACTCAGTGCTCTGGGTGGGCAGAGATTACATTAAGaaccaatggaatggtctaaaatgTTCCGCCCATCCGGCGCCCCAAAACCAATCCACCCAGGGGTTGACCCTGAGTGGAACAACACAAccgcacacagacagagagagacacctaTACCTGGGACACAGAAGCACATGTTGCTGGAGCAGACTCACCAGCTGACCTGTCAATCATCCACACAAGACCCGCCCTCCCCACCTGTCAGTCATCCACACAAGACCCGCCCATTGGCTACTCCGACCACTCCTGCGAAAAACACTGTCCTCATATAGGGAAACCATACAACACTGTGAATACAATTATTTCTCCTTCTTTACTTGTACAGAACTTgtaaataacaaaaacatgacaaccaatgtttgtttttttaaaacacTGTTTTAAAGCTTCCCCCATAGTGGTTTTTACGTCTGTTCTACTTCTACCACACGTTGTTGCCTGAAGAAGGAGACGATTTTGGCACAAACCTGGTAAAGATACAGTAAATCAATCACAATGTACAGGTTTCAAAATTATGCAGAAACCATCAAATCTACCCATGCATCAAGTAAGGCAACCTACTGCAGATTTTTTATatagaaagatatatatatatatatatatcgtacTGCACTATGACAAGTGCACCTATTTCTACCACACCTGTAAGAACTCCTATCAGCAGCCTCTGCTGAATCTACACTTTAAACTGAGCTCATGGGTTGGTGGGGGATGTCAGGAACCGCCCCCTTTAGGACCCCAATGGCATCCTGGGTAATGTAGTCACATTCTACTGGAGAGAAGTAGCATAATGCAAGGTGCGCTCTTATGCTACAGTAGCTTTATGGATATTCCAACCGTAAAATAGATTTGTATTTTTCTTCCCGCAGGACTATTGTTTTGTCCACATTTATTTTTTCAATGTTTATGTAAAGAAATACTAAATGGTTTGCATTGACTGAATTTGTGTGTATTGGTGCACATCCGAACATGTCCAGTTAGttgtgtgtgtgaacaggtgatgcgtgatactgtgtgtgggtgggtgtgctgCCTCTGTGTTTTCTACAAATCTTTTGTTTTGATCAAAGTGACCAGGGGCTTGTCGTCAGGGCTGTAGTCCTCGTAGGTGATGGGTGCGGCGTCGTACATGGCTGGCCGGGACTTCTTCCCAAATCTGAGAGAGGGGACGAAAACACATACATGGAACATCACTTCAGAGTGAGCGAACATTGTGCCGTCTCACCTGGCGTGGCGGATGGAGGCGATGGCGTTGCTGAACTCGCTGTCGATGCTGCGGCAGTTGTAGAACTCCTGGTAGGCATGGCGAGATGAGCCCTGGTACTCGATGCGGCTGATGCGGCAGATGCCCACGATGAGGATGATGAGCATGAGGACGAAGGCCACGCACAGGGCACCGATGATGATGTAGAGGGAGTGACGTGGCATGTTGGTCAGGGTGTCCTCAGGGTGGGCCGTCTTCCACTGCaag
>TU2175312
TGGGTTTGTGTTCACTTCAATCTTTATTGTTACATCATTGAACATAGATAATACTCATGTGGTTCTTCTCTTTTAGAAAAAGGACAATGATCCTAGTTGGCTAAACATCAGTCAAGTGGAGAGCTCACTCAGTGCTCTGGGTGGGCAGAGATTACATTAAGaaccaatggaatggtctaaaatgTTCCGCCCATCCGGCGCCCCAAAACCAATCCACCCAGGGGTTGACCCTGAGTGGAACAACACAAccgcacacagacagagagagacacctaTACCTGGGACACAGAAGCACATGTTGCTGGAGCAGACTCACCAGCTGACCCCCACCTGTCAGTCATCCACACAAGACCCGCCCATTGGCTACTCCGACCACTCCTGCGAAAAACACTGTCCTCATATAGGGAAACCATACAACACTGTGAATACAATTATTTCTCCTTCTTTACTTGTACAGAACTTgtaaataacaaaaacatgacaaccaatgtttgtttttttaaaacacTGTTTTAAAGCTTCCCCCATAGTGGTTTTTACGTCTGTTCTACTTCTACCACACGTTGTTGCCTGAAGAAGGAGACGATTTTGGCACAAACCTGGTAAAGATACAGTAAATCAATCACAATGTACAGGTTTCAAAATTATGCAGAAACCATCAAATCTACCCATGCATCAAGTAAGGCAACCTACTGCAGATTTTTTATatagaaagatatatatatatcgtacTGCACTATGACAAGTGCACCTATTTCTACCACACCTGTAAGAACTCCTATCAGCAGCCTCTGCTGAATCTACACTTTAAACTGAGCTCATGGGTTGGTGGGGGATGTCAGGAACCGCCCCCTTTAGGACCCCAATGGCATCCTGGGTAATGTAGTCACATTCTACTGGAGAGAAGTAGCATAATGCAAGGTGCGCTCTTATGCTACAGTAGCTTTATGGATATTCCAACCGTAAAATAGATTTGTATTTTTCTTCCCGCAGGACTATTGTTTTGTCCACATTTATTTTTTCAATGTTTATGTAAAGAAATACTAAATGGTTTGCATTGACTGAATTTGTGTGTATTGGTGCACATCCGAACATGTCCAGTTAGttgtgtgtgtgaacaggtgatgcgtgatactgtgtgtgggtgggtgtgctgCCTCTGTGTTTTCTACAAATCTTTTGTTTTGATCAAAGTGACCAGGGGCTTGTCGTCAGGGCTGTAGTCCTCGTAGGTGATGGGTGCGGCGTCGTACATGGCTGGCCGGGACTTCTTCCCAAATCTGAGAGAGGGGACGAAAACACATACATGGAACATCACTTCAGAGTGAGCGAACATTGTGCCGTCTCACCTGGCGTGGCGGATGGAGGCGATGGCGTTGCTGAACTCGCTGTCGATGCTGCGGCAGTTGTAGAACTCCTGGTAGGCATGGCGAGATGAGCCCTGGTACTCGATGCGGCTGATGCGGCAGATGCCCACGATGAGGATGATGAGCATGAGGACGAAGGCCACGCACAGGGCACCGATGATGATGTAGAGGGAGTGACGTGGCATGTTGGTCAGGGTGTCCTCAGGGTGGGCCGTCTTCCACTGCaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2175311 False 1632 lncRNA 0.46 3 11190675 11192759
TU2175312 True 1595 TUCP 0.46 4 11190675 11192759

Neighbor

gene id symbol gene type direction distance location
fbxo36a LOC106612583 coding downstream 142818 11046623 ~ 11047857 (-)
LOC110503737 LOC106612576 coding downstream 145127 11034019 ~ 11045548 (-)
LOC110503738 rasa2 coding downstream 162794 10983924 ~ 11027881 (-)
shbgb shbgb coding downstream 208557 10972091 ~ 10982118 (-)
LOC110503734 rnf7 coding downstream 272793 10915471 ~ 10918092 (-)
daw1 daw1 coding upstream 221088 11413847 ~ 11428873 (-)
LOC110503748 LOC106612568 coding upstream 260608 11453367 ~ 11478299 (-)
LOC110503749 LOC106612565 coding upstream 287418 11480177 ~ 11482937 (-)
LOC110503750 LOC106612566 coding upstream 290667 11483426 ~ 11488826 (-)
LOC110503751 LOC106612562 coding upstream 402435 11595194 ~ 11814542 (-)
G1901874 NA non-coding downstream 81258 11109122 ~ 11109417 (-)
G1901873 NA non-coding downstream 81642 11108721 ~ 11109033 (-)
G1901872 NA non-coding downstream 82415 11108038 ~ 11108260 (-)
G1901870 NA non-coding downstream 84589 11104687 ~ 11106086 (-)
G1901838 NA non-coding downstream 158297 11031445 ~ 11032378 (-)
G1901925 NA non-coding upstream 416 11193175 ~ 11193578 (-)
G1901927 NA non-coding upstream 2809 11195568 ~ 11207179 (-)
G1901948 NA non-coding upstream 48075 11240834 ~ 11241148 (-)
G1902093 NA non-coding upstream 79452 11272211 ~ 11272504 (-)
G1902181 NA non-coding upstream 237375 11430134 ~ 11430370 (-)
G1901516 NA other downstream 334238 10853831 ~ 10856437 (-)
G1901405 NA other downstream 573194 10616924 ~ 10617481 (-)
G1901302 LOC106612600 other downstream 790818 10399042 ~ 10399857 (-)
G1901206 NA other downstream 984727 10205220 ~ 10205948 (-)
G1902875 NA other upstream 775083 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other upstream 787052 11941794 ~ 11982431 (-)
LOC110503775 pou2af1 other upstream 1524691 12716285 ~ 12724009 (-)
rabx5 rabx5 other upstream 2523891 13716650 ~ 13719451 (-)

Expression


Co-expression Network