G1903479 (LOC106612553)


Basic Information

Item Value
gene id G1903479
gene name LOC106612553
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 12704010 ~ 12708491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2177062
ACACACccaagaataaataaataaaactttgACACATTCCTTTTCCCCTAAGTGAGTGTTGACTCTCAGTGAACTGGTACAGGATAAAaccctatttaaaaaaaaaacaacaattacaTTTTAATTGGGAAATTGTACGGAACAAATGTTCTGGTACTTGGTAATTGTTTCATTATTCTTTTCATTGTGTCTTTATGTTGCAAATCGAGACTGTCCAGACAAAAGAAGAAGATAATATTATCCTCAAAATGAAAGATGTGTAAAAAGGGAGCTGTAAGAAGGAGGCAAGGAGGAAATATaatcaaaaataaaatgtaaattaaaaaacGGATCATATTAAATGGAGGGTGGTTCCTTATCCCAAAGGGACCAGTATCCCCAATATCGTTCTAATGCATGGAGTTCCTCCAGCCCATAGAGACCTATCTAAATAGAAAAGACTGAGACCAGACAGATTCATTTCTAAGTATGATTAAGGTAGAGATTTCAATATGTAAATGTGTCATTTTGCTGAACTATCCATTTTATGTTAGTGGGGCCACTTTCAGTGGCTTATGAATTATTTGTGAAGCATTCATGGACCTTATAAAGAAAGGGTTTATGGGCTTGAGACAGTTAGATGAGCTGAACGTGATGGGCGATGAGGTTGCTGTTCTATATTAGGGACGATGCCTGCTTTGTTTATGAAAAGCTAcacagtgttcttggggaactaCCTTTTCATACAATTAACCTTCTCTGCTTGTACCTAAAATCccacctcccctccactcccaccAATACCAGAACTCAAGACAGTACCAAACCACCTTGTCACATTTGTCAGTTAAGTTACAAGACAGCTCATTTAGGCCATTGAGCACCACAGCAAACTTTTCCAATTGTCTGGTATAGAAACCCAGGAACCTATGAGCTGCCAGTAAGAGTTTTACCAGGGTTCATATGTATTTCCTTTCATATACTGTACTTTGAGTatttgattgagcctgcctggagtgtGAGATGGGTGAGTTTATACTTTTGGGACAATTCCATTGTTTCAgttgtgccaggcaagctcaatcaagcacagctaacgtagcttaaaaaaataaacaaatgctatttgaacccaggtctgcagaGGACAGCAGTTATTACATTAGGGCCCAGCATTTACTGTAACTGGGGCTCATAGGCCCTATagatttatttaatttcatatgAAGTTCACCATCAACTCAAGGTCAGGAGAAAGGACCATACTTGAAGACCCctctttcaaatattttactcTCCTTGTTTTCAGTGTTTGCAATtgcatctctcctcctccccttctccaccTTCAGTCTAGTATCTCATAGGTTCTTCTGAGGATCTCCTGATGACACGACAAAACACTAGCGTTACCCTCATTATTAACTCCATTCTAATGAATGAGAGCACACCCAGACATGCTTCAGCTCAGCTTGTATAAAAAGAAAAAAAGGTGCTCTACTGAGGATTTAGAAATCCAAAAAGAAACATCTTACCGAACCCTTCACAAGATCACTATCTCAGAACACTGGTTGGTTCATGAGTTGGACGTCATAAGAGGTCAAGGACCACAGCAGGCAGGCCTACTTCTAGCCCTGCTCAACCTTGCTTTATCTCGGCCTCGGAGAAGATAGAGATCCTGATGCAGAGGAGGGTGCGCTCGGAGGCTAGAGTGGAGACAGGCGTCTCTTGAGCTGGATGTGACCTGATGTGACGTTGACTTGCGTGTGCCTCCATGGGAGACCATTTTCCACATCAAGAACGGTCAATATTAACCTTATTGTTGTGTTTGTCTTCAGTTGTTATAGGGTCTTTCCGATTATTTTTTGTAACGACAAGCACTATAGATATTAATTATCTATCATTATCGCTTGTCTATTGTCATTTATCTTTCAATCTAGTTAATGTGGTGGCAGGTGTAGTGGTTTTTATTTGGGTCCAACAAGGGGCTGGTTTTAGCCGTAAATATGAttcaatgacttgaaaaacaACATTTAAGTTAATGTTTCTAACTAAGTTTCTGTGTGCATCTGAACAGGGAAACTAAACATTGAGTTGATTGGGATGATGCTGCTAATTTCCTTTGGGTAGGCCTTTCAATTATTTTACTAAATGAATGcattcataaaaaaatatatactttcttGTAAAAAAAGATGTGTTTTTATATATCTAAATCACAGTCAGTAACTAACTAGATAGCTGTAAGCCCATACATTTGCAACATTTAGCCAAACTCATGAATTCTAAAAGCATTCTTCCAATCATAACAAAAACAGAAACTCCGAGGAAACTTTGACAGCAAACACTCCGAAATGCAAAGCAGGCCTACATCTTAAAACAAGTGCCACACGTGCAACCGTTTGACATCGAGTTACAGACATTGTTTTCACTGTACATTCTACTGTATTTACACAGAAAACAAAGACCGAGAGTATCTTTAAAGGTAACACATCTCTGAACTTGACAATTCCCGCCTGAAATAGCTGGCATCCACAGGCGAGGCGTGTACACAGTCTGTTGTGCCATAAATAGCGTATTCTGGAGTGGAGATGCTCTCCTGTGTACCCGACCAATGGGACAGGCAGTAGCAGTGCTGGAGGTTACAGTGCTGGTAGTGGTAGTGCTCTGGAACAAATCCATAACTCGAGTCCATCCTGTTCGGAGAGTTGTAACACGACGAAGAGTAAGACTCCTGTGGCGAATAACTATTGTAATCGACCGGACTTGACATATTTAGAGAACCTGATGGTGAGCTGGGAGCCTGAAAAACAATCCAGAGGAGATGTGCATTAATATTGTTGTACAGTATAACCAAACCATGTTCTATTCCGAGCCAACTCTCTGGACAGACGAACAAACAGCCTGAGCTTTGTCAAATATTTCAGCTGACGGCTGGTAATTGCAAAGACAGGTGATTGCGCAAGCGAATTTGAATAAAGCATACCATGCCATTGACGCAATAGTCCATATTCAGGGAGTGATTTTCCTGGGGCCAAAGTTTTGTTGAAGTAGCGGGATGCATAATACCACTGCTGTAGGTCTCGTTGGGCATCATCATGCTTATCAATTGTTGATTATCGAAGCTTTCCATCTGAACGTTGCTGTCTGGAAAGGCCCGCGGCTGAAAGCTGCCGTTGGAATTCATCTCTTGAGGGAAATAATCAAAATAATGGCCTATAGGAATAAACGAGAAGGATCAGTCAGAAACACATGCAGTGGCCATTGAAAAAAGTGAAGACTCCAGAAGTGATGTCACGGCACCACCAGCCAACAGCTAAAAAACAAATTTGAATGCAAGTTTATAAAAAGGTCCCAGTATATGTTTCGAACTATTCTGCTGTGGTCGTTGATTCTCAATGTAAGTGTCAATCTAGAGATTTACCTGACCGAATCTGATGTGCAATTCAGATTTTATTTTATAATAGGCTTATGTGGTGGATTTGACAGCTATTTATCTATTTGCATGTATGATGCATAATGCATTGCCTTCTGCCTTTTTGATCGAAGCTTGTTTATTTGATTATGGTTTACTGCAACGCCCCCACTGGACAATTCAAAAGGAtgttactgtactttactgtaggctacatgtatTTTCGTTAGCAGGTTTGGATACAGTCAAGAGCATTACTTTTTTACTATAGAACATTGATTCTGGACTTTACATGGTGATGCTTTACCATACAATCATTGTGCGATCAAGACAATGGAATGCTGTGTATAAATACTGACTAATATATGGACATAGTGGAACGTACCTGGCAAGGAGGAGGAGACGCAAACATCCTGACTCGCCAAGCTCTGGGATTTCTATTCATTTAGGAAAAGAGAAAAGGAAGGATACAGAGAGAAAACACAAGTCCCCATTGATTTACAACAGTTCGATTTTTGGGCTGgttatttttcataatttttcaTCCCAGTACTGTATAGCACTGTATAGCACTGTGTAGCACTGTGTAGCACTGTATAGCACTGTATAGCACTGTATAGCATAATAATGGCATTTGCCGATTAGTTTATTCTTCCTCTTCATTTCGGAGggttgattgagtgtgtgtgtgtttgagccaatTGTTGCCAGTTGCCAT

Function

NR:

description
colorectal cancer-associated protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2177062 True 4112 lncRNA 0.40 2 12704010 12708491

Neighbor

gene id symbol gene type direction distance location
LOC110503769 LOC106612539 coding downstream 107318 12570052 ~ 12596692 (-)
il4i1 LOC106612549 coding downstream 276022 12423276 ~ 12427988 (-)
LOC110503765 LOC106612556 coding downstream 284029 12405983 ~ 12419981 (-)
LOC110503763 LOC106612548 coding downstream 317946 12378904 ~ 12386064 (-)
LOC110503325 sorl1 coding downstream 332619 12298441 ~ 12371391 (-)
LOC110503775 pou2af1 coding upstream 7794 12716285 ~ 12724009 (-)
LOC110503777 atf5 coding upstream 62366 12770857 ~ 12775243 (-)
LOC110503783 NA coding upstream 78816 12787307 ~ 12796055 (-)
LOC118944087 LOC106612531 coding upstream 173283 12881774 ~ 12898729 (-)
LOC110503778 NA coding upstream 244193 12952684 ~ 13036439 (-)
G1903481 NA non-coding downstream 879 12637922 ~ 12703131 (-)
G1903452 NA non-coding downstream 93549 12610169 ~ 12610461 (-)
G1903223 NA non-coding downstream 138114 12565639 ~ 12565896 (-)
G1903212 NA non-coding downstream 145808 12557991 ~ 12558202 (-)
G1903523 NA non-coding upstream 886 12709377 ~ 12709598 (-)
G1903574 LOC106612534 non-coding upstream 108698 12817189 ~ 12831695 (-)
G1903595 NA non-coding upstream 153140 12861631 ~ 12933686 (-)
G1903598 NA non-coding upstream 159222 12867713 ~ 12939238 (-)
G1903640 NA non-coding upstream 313935 13022426 ~ 13070359 (-)
G1902875 NA other downstream 651362 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other downstream 723548 11941794 ~ 11982431 (-)
LOC110503748 LOC106612568 other downstream 1242963 11453367 ~ 11478299 (-)
G1901922 LOC100380637 other downstream 1511251 11190675 ~ 11192759 (-)
LOC110503734 rnf7 other downstream 1785918 10915471 ~ 10918092 (-)
rabx5 rabx5 other upstream 1008159 13716650 ~ 13719451 (-)
G1904408 NA other upstream 1049337 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 1334479 14042970 ~ 14043449 (-)
G1904877 NA other upstream 1381231 14089722 ~ 14142728 (-)

Expression


Co-expression Network