Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_038088 |
| gene name | ttn.2 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 42894845 ~ 43073960 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| ttn.2 | A structural constituent of muscle. Acts upstream of or within several processes, including heart contraction; myofibril assembly; and striated muscle tissue development. Located in centriole; cytoplasm; and nucleus. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; somite; and testis. Used to study atrial fibrillation and dilated cardiomyopathy. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Orthologous to human TTN (titin). |
| id | name | namespace |
|---|---|---|
| GO:0048738 | cardiac muscle tissue development | biological_process |
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0048769 | sarcomerogenesis | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0000902 | cell morphogenesis | biological_process |
| GO:0045214 | sarcomere organization | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0071688 | striated muscle myosin thick filament assembly | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008307 | structural constituent of muscle | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030113-2 | A structural constituent of muscle. Acts upstream of or within several processes, including heart contraction; myofibril assembly; and striated muscle tissue development. Located in centriole; cytoplasm; and nucleus. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; somite; and testis. Used to study atrial fibrillation and dilated cardiomyopathy. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Orthologous to human TTN (titin). |
| ensembl_id | ENSDARG00000028213 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00074695 | False | 67298 | mRNA | 0.43 | 135 | 42894845 | 42989297 |
| TCONS_00074696 | False | 78795 | mRNA | 0.43 | 177 | 42900371 | 43071519 |
| TCONS_00074698 | True | 23044 | mRNA | 0.43 | 75 | 43006800 | 43073960 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_038087 | NA | coding | downstream | 4413 | 42879160 ~ 42890432 (-) |
| XLOC_038086 | ttn.1 | coding | downstream | 21145 | 42732992 ~ 42873700 (-) |
| XLOC_038085 | fkbp7 | coding | downstream | 164173 | 42728269 ~ 42730672 (-) |
| XLOC_038084 | BX640465.1 | coding | downstream | 183589 | 42710633 ~ 42711256 (-) |
| XLOC_038083 | col5a2a | coding | downstream | 198437 | 42653188 ~ 42696408 (-) |
| XLOC_038090 | ccdc141 | coding | upstream | 571 | 43074531 ~ 43142677 (-) |
| XLOC_038091 | sestd1 | coding | upstream | 75894 | 43149854 ~ 43213229 (-) |
| XLOC_038092 | znf385b | coding | upstream | 169252 | 43243212 ~ 43538328 (-) |
| XLOC_038093 | cwc22 | coding | upstream | 478555 | 43552515 ~ 43644261 (-) |
| XLOC_038094 | NA | coding | upstream | 591109 | 43665069 ~ 43667103 (-) |
| XLOC_038079 | NA | non-coding | downstream | 736441 | 42126736 ~ 42158404 (-) |
| XLOC_038080 | NA | non-coding | downstream | 761732 | 42130055 ~ 42133113 (-) |
| XLOC_038076 | BX571827.1 | non-coding | downstream | 1333347 | 41559355 ~ 41561498 (-) |
| XLOC_038095 | NA | non-coding | upstream | 637728 | 43711688 ~ 43798248 (-) |
| XLOC_038097 | FP102928.1 | non-coding | upstream | 1049009 | 44122969 ~ 44123093 (-) |
| XLOC_038100 | BX548025.1 | non-coding | upstream | 1544199 | 44618159 ~ 44618275 (-) |
| XLOC_038101 | NA | non-coding | upstream | 1545461 | 44619421 ~ 44624221 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00001089 | LOC107698997 | coding | CM030137.1 | CM030137.1 | 14404322 ~ 14473499 (+) |
