G1904396


Basic Information

Item Value
gene id G1904396
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13734759 ~ 13740554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2178120
tggcacgtcttaggcttgtcacaatccctcgcctcatgatcctcagatgcacaaaatctgcattttcttgtactgcatgaggcaaatatgtgaccgtaggccatacagcgtctgcaaaatgggggctgacgtgcataaaacaacgtccccctgtcagcccctagggagaacatagcaggaggatggaggtagccaccatgtccctttgggtcctctctgaggagggcctggaaacctctcctcccattccaaaacccaagggagtctttgaggtgccttgctgaggagacGTTATCCATATATCTCCCCAGAAAAGCCCTCACctcttcgtccttaacgtaagggttgtaaatgttgacagttacaaccctaaaattattcttcgccaggcttgttatttcgtagtggcacatcggcctctcacctcccactgctcttgcccttctcaggatatcatcgtgttttacctctgtatatagtgccacgtcgtatgctccctccaacgagttgccttggaaacaaaacacgtcctTCACCGTCAGCTTTAGAATCCCCAT

Function

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2178120 True 557 lncRNA 0.50 2 13734759 13740554

Neighbor

gene id symbol gene type direction distance location
rabx5 rabx5 coding downstream 15312 13716650 ~ 13719451 (-)
LOC110503800 LOC106612904 coding downstream 27617 13702362 ~ 13707142 (-)
LOC110503795 ppm1l coding downstream 68284 13613805 ~ 13666475 (-)
kpna4 kpna4 coding downstream 127548 13593942 ~ 13607211 (-)
LOC110503327 LOC106580965 coding downstream 143970 13589867 ~ 13593563 (-)
LOC110503330 LOC106612760 coding upstream 71098 13811652 ~ 13812593 (-)
LOC110503333 LOC106612769 coding upstream 146965 13887519 ~ 13888439 (-)
LOC110503334 LOC106612769 coding upstream 154731 13895285 ~ 13896205 (-)
LOC118943997 LOC106612769 coding upstream 162485 13903039 ~ 13903959 (-)
LOC110503335 LOC106612769 coding upstream 172803 13913357 ~ 13914277 (-)
G1904393 NA non-coding downstream 4494 13730028 ~ 13730265 (-)
G1904391 NA non-coding downstream 6697 13727785 ~ 13728062 (-)
G1904389 NA non-coding downstream 8109 13726407 ~ 13726650 (-)
G1904386 otol1 non-coding downstream 34183 13699081 ~ 13700576 (-)
G1904384 NA non-coding downstream 37384 13696982 ~ 13697375 (-)
G1904398 NA non-coding upstream 644 13741198 ~ 13741519 (-)
G1904423 NA non-coding upstream 40787 13781341 ~ 13786197 (-)
G1904486 NA non-coding upstream 131039 13871593 ~ 13872018 (-)
G1904829 ints4 non-coding upstream 271604 14012158 ~ 14012456 (-)
G1904836 NA non-coding upstream 288217 14028771 ~ 14029064 (-)
LOC110503775 pou2af1 other downstream 1010762 12716285 ~ 12724009 (-)
G1902875 NA other downstream 1682111 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other downstream 1754297 11941794 ~ 11982431 (-)
LOC110503748 LOC106612568 other downstream 2273712 11453367 ~ 11478299 (-)
G1904408 NA other upstream 17274 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 302416 14042970 ~ 14043449 (-)
G1904877 NA other upstream 349168 14089722 ~ 14142728 (-)
G1904919 NA other upstream 439509 14180063 ~ 14214520 (-)
G1905348 NA other upstream 879109 14619663 ~ 14621372 (-)

Expression


Co-expression Network