G1905349


Basic Information

Item Value
gene id G1905349
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14617161 ~ 14619409 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2179187
gcagCACAGATGGAAAAGAGAAGAgcaggagagtgagggaggaagaaaggagtgacagtgaggaagggagagagggaaaggaggggaggaatgaaagtgacagggaggaaggaagaagagagagtgaggaagggagagagggaaaggaggggaggacagagtgtaaggagacagagagtgatggAAAGATTGAAGAGGGAGGATTTAGAGGTGATAGTAGCAGTGATTCAGAAGAAGGGTCTgttggggtgagagaggggggagtggagaggcagggggagggatcAGCTGGAGAAGAGAGGTCTTCTCCTCCCCGGCCCGCCAGACAGAGCCGTGTGATTCGTCTGTACCAGTACGATGAGGAGGGGCATCGCTATAGTCACCTGCCAAACCCCGTCCCCATGGAACGTACTTCCCCTGCTCCACAGGCCAAGCAACGCTCGCTGTCCCTCACCAGGCTCAACACCATCATGGCTGCTGCCACCGCCAGCCCCATGGACCCACAGAACCCCCTGGGCCGAGACTCAGACCCCCAGGACTCAGACCCTGAGGAGAGGGATACAGCCAGTCCAGCCAGCCCATCCCAGGGCCAGGAGAGACCAGTCTTTCAACTGGAGATATGACATACAAGATCTAGGCCTGTAtacataaagtgtctcagagtagagcTGCTGATAAATGATCCAGTCCTaacctgtccatataatcttaatCATTATGATATAAAAGGCAAAACTGGTTCAAGATCAGCCCTCCTAAACTTGATAGATGCAGCCCGAGCAAAAAGATCTGGGTCATGTTCAGTCAGGCATACAGAGACAATGTACCAAAATGGTttgaaacagaaaacaaaaatgtgtgttTCCTACTGGATAATTTTAACAGTTAGTGCCTTGGCATTTCACTCCATTATGAAACATTTTCTCAATCACAAATTCTCACACACAAATTCCTAGACACACTTAAGATTTTGACTTGTCATCACATCCAGCAGATTCCATTATTGTTTTGTAAAAGCAATTGGAAATAAAACATTACAAGTAAATGTTCAATTTGGATGATTGtgttgctgacctgttgcaccctcaacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctcaacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctctacaaccactgtgattattattatttgaccctgctgttcatctatgaacatttgaacatcttggccatgcacTGTTATAATCTTAACCTGACACAGCCAGAAtatgactggccacccctcagagcctggttcctctctaggtttcttcctaggttcctgcctttccagggagtttttcctagccaccgtgctcctacatctgcattgtttgctgtttggggttttaggctgggtttctgtatagcactttgtgacatcggctcatgtaaaaagggatttatatatacatttgattgattgttaaTTTAAAGTTAGTCCCTGTGTATTTGGTTCTAACCTTGTCCACAGGTTATGATTGCACATAGCACTAATACGCCTGGAATAACAACTATAGTCTGGCCTATGTTagagtgaacaaaaatataatgatTTGTCTGAATCACAACTGCAAGACAGGGGTACACAAATTAGAGGTAGACAATACAGGAGGAAGTGTTCAGAGGCGATTGATTAAATATTAAGCTGATGGCTAATGA
>TU2179188
gcagCACAGATGGAAAAGAGAAGAgcaggagagtgagggaggaagaaaggagtgacagtgaggaagggagagagggaaaggaggggaggaatgaaagtgacagggaggaaggaagaagagagagtgaggaagggagagagggaaaggaggggaggacagagtgtaaggagacagagagtgatggAAAGATTGAAGAGGGAGGATTTAGAGGTGATAGTAGCAGTGATTCAGAAGAAGGGTCTgttggggtgagagaggggggagtggagaggcagggggagggatcAGCTGGAGAAGAGAGGTCTTCTCCTCCCCGGCCCGCCAGACAGAGCCGTGTGATTCGTCTGTACCAGTACGATGAGGAGGGGCATCGCTATAGTCACCTGCCAAACCCCGTCCCCATGGAACGTACTTCCCCTGCTCCACAGGCCAAGCAACGCTCGCTGTCCCTCACCAGGCTCAACACCATCATGGCTGCTGCCACCGCCAGCCCCATGGACCCACAGAACCCCCTGGGCCGAGACTCAGACCCCCAGGACTCAGACCCTGAGGAGAGGGATACAGCCAGTCCAGCCAGCCCATCCCAGGGCCAGGAGAGACCAGTCTTTCAACTGGAGATATGACATACAAGATCTAGGCCTGTAtacataaagtgtctcagagtagagcTGCTGATAAATGATCCAGTCCTaacctgtccatataatcttaatCATTATGATATAAAAGGCAAAACTGGTTCAAGATCAGCCCTCCTAAACTTGATAGATGCAGCCCGAGCAAAAAGATCTGGGTCATGTTCAGTCAGGCATACAGAGACAATGTACCAAAATGGTttgaaacagaaaacaaaaatgtgtgttTCCTACTGGATAATTTTAACAGTTAGTGCCTTGGCATTTCACTCCATTATGAAACATTTTCTCAATCACAAATTCTCACACACAAATTCCTAGACACACTTAAGATTTTGACTTGTCATCACATCCAGCAGATTCCATTATTGTTTTGTAAAAGCAATTGGAAATAAAACATTACAAGTAAATGTTCAATTTGGATGATTGtgttgctgacctgttgcaccctcaacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctcaacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgacctgttgcaccctctataaccactgtgattattattatttggatgattgtgttgcagacctgttgcaccctctacaaccactgtgattattattatttggatGATTGggttgctgacctgttgcaccttctacaaccactgtgattattattatttggatgattgtgttgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctctacaaccactgtgattattattatttgaccctgctgttcatctatgaacatttgaacatcttggccatgcacTGTTATAATCTTAACCTGACACAGCCAGAAtatgactggccacccctcagagcctggttcctctctaggtttcttcctaggttcctgcctttccagggagtttttcctagccaccgtgctcctacatctgcattgtttgctgtttggggttttaggctgggtttctgtatagcactttgtgacatcggctcatgtaaaaagggatttatatatacatttgattgattgttaaTTTAAAGTTAGTCCCTGTGTATTTGGTTCTAACCTTGTCCACAGGTTATGATTGCACATAGCACTAATACGCCTGGAATAACAACTATAGTCTGGCCTATGTTagagtgaacaaaaatataatgatTTGTCTGAATCACAACTGCAAGACAGGGGTACACAAATTAGAGGTAGACAATACAGGAGGAAGTGTTCAGAGGCGATTGATTAAATATTAAGCTGATGGCTAATGA
>TU2179189
gcagCACAGATGGAAAAGAGAAGAgcaggagagtgagggaggaagaaaggagtgacagtgaggaagggagagagggaaaggaggggaggaatgaaagtgacagggaggaaggaagaagagagagtgaggaagggagagagggaaaggaggggaggacagagtgtaaggagacagagagtgatggAAAGATTGAAGAGGGAGGATTTAGAGGTGATAGTAGCAGTGATTCAGAAGAAGGGTCTgttggggtgagagaggggggagtggagaggcagggggagggatcAGCTGGAGAAGAGAGGTCTTCTCCTCCCCGGCCCGCCAGACAGAGCCGTGTGATTCGTCTGTACCAGTACGATGAGGAGGGGCATCGCTATAGTCACCTGCCAAACCCCGTCCCCATGGAACGTACTTCCCCTGCTCCACAGGCCAAGCAACGCTCGCTGTCCCTCACCAGGCTCAACACCATCATGGCTGCTGCCACCGCCAGCCCCATGGACCCACAGAACCCCCTGGGCCGAGACTCAGACCCCCAGGACTCAGACCCTGAGGAGAGGGATACAGCCAGTCCAGCCAGCCCATCCCAGGGCCAGGAGAGACCAGTCTTTCAACTGGAGATATGACATACAAGATCTAGGCCTGTAtacataaagtgtctcagagtagagcTGCTGATAAATGATCCAGTCCTaacctgtccatataatcttaatCATTATGATATAAAAGGCAAAACTGGTTCAAGATCAGCCCTCCTAAACTTGATAGATGCAGCCCGAGCAAAAAGATCTGGGTCATGTTCAGTCAGGCATACAGAGACAATGTACCAAAATGGTttgaaacagaaaacaaaaatgtgtgttTCCTACTGGATAATTTTAACAGTTAGTGCCTTGGCATTTCACTCCATTATGAAACATTTTCTCAATCACAAATTCTCACACACAAATTCCTAGACACACTTAAGATTTTGACTTGTCATCACATCCAGCAGATTCCATTATTGTTTTGTAAAAGCAATTGGAAATAAAACATTACAAGTAAATGTTCAATTTGGATGATTGtgttgctgacctgttgcaccctcaacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctcaacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctctacaaccactgtgattattattatttggatgattgtgttgctgacctgttgcaccctctacaaccactgtgattattattatttgaccctgctgttcatctatgaacatttgaacatcttggccatgcacTGTTATAATCTTAACCTGACACAGCCAGAAtatgactggccacccctcagagcctggttcctctctaggtttcttcctaggttcctgcctttccagggagtttttcctagccaccgtgctcctacatctgcattgtttgctgtttggggttttaggctgggtttctgtatagcactttgtgacatcggctcatgtaaaaagggatttatatatacatttgattgattgttaaTTTAAAGTTAGTCCCTGTGTATTTGGTTCTAACCTTGTCCACAGGTTATGATTGCACATAGCACTAATACGCCTGGAATAACAACTATAGTCTGGCCTATGTTagagtgaacaaaaatataatgatTTGTCTGAATCACAACTGCAAGACAGGGGTACACAAATTAGAGGTAGACAATACAGGAGGAAGTGTTCAGAGGCGATTGATTAAATATTAAGCTGATGGCTAATGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106612884

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2179187 False 1965 lncRNA 0.45 2 14617161 14619409
TU2179188 False 2136 lncRNA 0.44 2 14617161 14619409
TU2179189 True 1797 lncRNA 0.45 2 14617161 14619409

Neighbor

gene id symbol gene type direction distance location
LOC110503819 slc35f2 coding downstream 19431 14592031 ~ 14597730 (-)
kbtbd3 kbtbd3 coding downstream 25232 14586940 ~ 14591929 (-)
LOC110503814 LOC106612890 coding downstream 31786 14567016 ~ 14585375 (-)
LOC110503815 dus14 coding downstream 67721 14547717 ~ 14549440 (-)
LOC110503811 stard13 coding downstream 97534 14404761 ~ 14519627 (-)
ompa LOC106612885 coding upstream 20399 14639806 ~ 14684005 (-)
LOC110503824 NA coding upstream 65883 14624102 ~ 14686972 (-)
LOC110503346 LOC106580992 coding upstream 68398 14687807 ~ 14697439 (-)
LOC110503826 LOC106612881 coding upstream 84167 14703576 ~ 14720819 (-)
LOC110503827 LOC106612879 coding upstream 109554 14728963 ~ 14734638 (-)
G1905321 NA non-coding downstream 67223 14542122 ~ 14549938 (-)
G1905308 NA non-coding downstream 85779 14526414 ~ 14531382 (-)
G1905301 NA non-coding downstream 102407 14514549 ~ 14514754 (-)
G1905300 NA non-coding downstream 102669 14514261 ~ 14514492 (-)
G1905299 NA non-coding downstream 104596 14511881 ~ 14512565 (-)
G1905350 NA non-coding upstream 2271 14621680 ~ 14621894 (-)
G1905428 NA non-coding upstream 170561 14789970 ~ 14790397 (-)
G1904919 NA other downstream 402641 14180063 ~ 14214520 (-)
G1904877 NA other downstream 474433 14089722 ~ 14142728 (-)
G1904846 spg20 other downstream 573712 14042970 ~ 14043449 (-)
G1904408 NA other downstream 858517 13757828 ~ 13758644 (-)
rabx5 rabx5 other downstream 897710 13716650 ~ 13719451 (-)
G1905348 NA other upstream 254 14619663 ~ 14621372 (-)
G1905324 LOC106612883 other upstream 2786 14622195 ~ 14655274 (-)
G1905737 NA other upstream 321281 14940690 ~ 14941172 (-)
G1905741 NA other upstream 326589 14945998 ~ 14946447 (-)
G1905780 NA other upstream 463900 15083309 ~ 15084752 (-)

Expression


Co-expression Network