G1905324 (LOC106612883)


Basic Information

Item Value
gene id G1905324
gene name LOC106612883
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14622195 ~ 14655274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2179145
ttgttatacagctttattaactcagtattagatgtatttatttttttgttacattgtttgccaactaatatgtgacacgtatgaatgaatgccaaaataacatgctaaACAGGTGAGGCTCAAATGCCCTGAATGATGTGTCGCTACTGAGTATTTGGCCTCCCACTGGAAAATCAATGTGATACAAAGTAGAGCAAGACAGAAATCTAATTTTTTAAAAGTTGAATTATGAAGTTAACAAAAATAAGTGTCTTATTGAAAGACTAGAAATGTCAGTAGCCGCTCTCAGCACCCAGATCAACTCAGTTTCTTGAGAGAGACTAGTACAAAGCTGACTGAAATGTAAAACATGGGAATAAATGTAAACAGGACAACATATACTGCTGAAATACTGGACATGCATTTATATATCAGTAATGGCACAAGTTAAAGTGGTTATAAAATGAGAAAGAAGAACTAGGAGATTATCTGTCCTCTGTTGCCCCTATGTGGTTGGAGTTAGTACTACACCCAGTAAAAACAACACTATATCGTCTGGAAGGCTAACTTTGGTCCCTCAACAGATATGTTTTATGGCAAATTAATATATTTTTATGGCTTCTCTCTCCTATTGGACGGAGGGAGTAAGGCACTGATTGATAGATTGGTTGACGGTTAGTCAGATGTTAGTGAGAATGTTGCTGGTCACCATGGAGACGGTGAGCGTACCCGGGAGGTCATTGTCTTGGTGATTACCCTTGTCCCTCAGGTGGACGGTAACCTGCTGGGGGTCGCCGGGGTCAGAGGTCAAACTGACCTGACCCAGGAAGGAATCCATCAACACGTTGTTGTTATACACCTCTATCAGTATAGGCTGGTTAGTTTTCTTCCTGTAGAATAGAGCCTTGGTGTCAAAGGTTGGGCTGCGGGTGTCTTTATAGACCGGAGAACAAACCTTCTCCCCCTCACAACGAATGATGACATATGGATCTgatgCTCCATCAGAGTCTTGTCCAGCCAGTCCATCTGCTCTGTGGACATGGATCTGAGTGACCAGGGAAGGGAAACCACACAGTCCTGACCAACACGTCTGGGCTGGCTCATCAAGGGTTAACTCtctgcagtcGGCGGGGACGTCAGTGAAGATGCGTAACAGGAAGTCTCCTTCCAGAGCGGGGTCAAAGGTCGTGGGTATGACAACGTAACGACCCTCCATCAAGACACAGCGTAGGAACACACACCTGGAGTTGATgtacacactcccacacaccttCTGCTGCCGAGTGTGCATACGGTACTGCCTGTTTAACTCCAcccgGTGTATCTCGAAGCCTATAGCCAGGTTTTCTCCTTTCCCCTCTTTAGGTCTggctcttctgtctgtctgctgtagaCATACCAGCACCTCATCCTCTGGCTTCTTCACGTTGAACACATACTGTGGGTTCTGTAGGAAGGTGTGTTTGTTGTTGGTGCAGCCCCCGGCGCGGTTGCTGAGCGGGTCGTCATGGTTCCGCCAGGCGCCCTTTAGAGAGCCCTCCTCCCAGGTCTTGTGGAGAGACAGGTAGGAAGTGTTGATCAGACGACACATGATCAAATCACTGAAGTACTGACAGAAGTCATCAAATGTCATCCAGAATTCTCCATCATCCTGCACCGTCATTCCGatcttctctctttcactcttacTCACCTTCCCCCACTCCTCtgagCTGTCGCTCCAGGCTCCTTTCCACTCGCTCTCTCCCCAGGGGTTTCGGAGTCGTATCATTGTGAGTTTGTCGGACTTGAAGTAAGCCATGAGGCCGTGGCCCAGCCGGACCTTTCTAACGTCTGTCACAGCGTAGGCATGACCCTTCACCAGACCACAGGCCAGACGAGCCTCCATCTCCGCTGAACTGGCCGCccgTATGGAGGCGCTGATGAGGCCTCCTCTGTTGTGAACCTTGAGGACTCTGTCGAACAGCACTGAGCGTTTCTCCTCGTCTGTACTCAACCCTTCCTCCAGCAGGTCCAAGGGCTCCGAGACGCCACCAGTGAAATCCACCAACGCATCCGCTGTGTTGCCCCCGTCCAATGCCTCGTAACAACCAtacatcTTGGCATAAGCCTTCTCCACCAGGGCGCTCCAGAACTCGTTGCTGTCACTGGAGTGACAATACACCAAGTTGCCGTTCGCAGTGGGCAACCGGTCGTCGATGACAACATCAATCCATTCTCCAAAGCGCCAGAAGCGGAAGTGGAAAATTCCGGCATAAGATTCCGGCTTCTCCTCATCCCATTCCTGGTCCTTATGATCCGGAATCACCTTTTGCCACAGAGTTTCTCTGGATGCCAGGGAGGAGCATGCAGCTACGAACCAACAGTTCCCCAGCTGGCCCTGGAGGAGGTCATGAGCACTGATACCATTCACAAACAACTTGGGGTTATCACACAGCTCCTTAGGTCTCTTCCAGGTGATGGTTCCTATGCGGTTGGTCTTGTAGAACAGAGACTGGTCCATAGCCGGAAACACAGAGTCTTCAAACAGGACTCGACGCTGCTGGCACTCCCTACGCAGGGAGGAATAGCCCTGGCTTTCATATGGCACCACCATCACCctgCTTGGAAGAGTTGACTCCCTCGATGACGTATTCGTTTCTGTCCTACTGGGGCTTCAGTCGGAGTGATCCCTTGTTCCCTCCCGGTGGCTGCTCTTCTGGTGCATGAGCTCCTCGGGACTCACTtgctgtctctttatctctctc
>TU2179146
ttgttatacagctttattaactcagtattagatgtatttatttttttgttacattgtttgccaactaatatgtgacacgtatgaatgaatgccaaaataacatgctaaACAGGTGAGGCTCAAATGCCCTGAATGATGTGTCGCTACTGAGTATTTGGCCTCCCACTGGAAAATCAATGTGATACAAAGTAGAGCAAGACAGAAATCTAATTTTTTAAAAGTTGAATTATGAAGTTAACAAAAATAAGTGTCTTATTGAAAGACTAGAAATGTCAGTAGCCGCTCTCAGCACCCAGATCAACTCAGTTTCTTGAGAGAGACTAGTACAAAGCTGACTGAAATGTAAAACATGGGAATAAATGTAAACAGGACAACATATACTGCTGAAATACTGGACATGCATTTATATATCAGTAATGGCACAAGTTAAAGTGGTTATAAAATGAGAAAGAAGAACTAGGAGATTATCTGTCCTCTGTTGCCCCTATGTGGTTGGAGTTAGTACTACACCCAGTAAAAACAACACTATATCGTCTGGAAGGCTAACTTTGGTCCCTCAACAGATATGTTTTATGGCAAATTAATATATTTTTATGGCTTCTCTCTCCTATTGGACGGAGGGAGTAAGGCACTGATTGATAGATTGGTTGACGGTTAGTCAGATGTTAGTGAGAATGTTGCTGGTCACCATGGAGACGGTGAGCGTACCCGGGAGGTCATTGTCTTGGTGATTACCCTTGTCCCTCAGGTGGACGGTAACCTGCTGGGGGTCGCCGGGGTCAGAGGTCAAACTGACCTGACCCAGGAAGGAATCCATCAACACGTTGTTGTTATACACCTCTATCAGTATAGGCTGGTTAGTTTTCTTCCTGTAGAATAGAGCCTTGGTGTCAAAGGTTGGGCTGCGGGTGTCTTTATAGACCGGAGAACAAACCTTCTCCCCCTCACAACGAATGATGACATATGGATCTgatgCTCCATCAGAGTCTTGTCCAGCCAGTCCATCTGCTCTGTGGACATGGATCTGAGTGACCAGGGAAGGGAAACCACACAGTCCTGACCAACACGTCTGGGCTGGCTCATCAAGGGTTAACTCtctgcagtcGGCGGGGACGTCAGTGAAGATGCGTAACAGGAAGTCTCCTTCCAGAGCGGGGTCAAAGGTCGTGGGTATGACAACGTAACGACCCTCCATCAAGACACAGCGTAGGAACACACACCTGGAGTTGATgtacacactcccacacaccttCTGCTGCCGAGTGTGCATACGGTACTGCCTGTTTAACTCCAcccgGTGTATCTCGAAGCCTATAGCCAGGTTTTCTCCTTTCCCCTCTTTAGGTCTggctcttctgtctgtctgctgtagaCATACCAGCACCTCATCCTCTGGCTTCTTCACGTTGAACACATACTGTGGGTTCTGTAGGAAGGTGTGTTTGTTGTTGGTGCAGCCCCCGGCGCGGTTGCTGAGCGGGTCGTCATGGTTCCGCCAGGCGCCCTTTAGAGAGCCCTCCTCCCAGGTCTTGTGGAGAGACAGGTAGGAAGTGTTGATCAGACGACACATGATCAAATCACTGAAGTACTGACAGAAGTCATCAAATGTCATCCAGAATTCTCCATCATCCTGCACCGTCATTCCGatcttctctctttcactcttacTCACCTTCCCCCACTCCTCtgagCTGTCGCTCCAGGCTCCTTTCCACTCGCTCTCTCCCCAGGGGTTTCGGAGTCGTATCATTGTGAGTTTGTCGGACTTGAAGTAAGCCATGAGGCCGTGGCCCAGCCGGACCTTTCTAACGTCTGTCACAGCGTAGGCATGACCCTTCACCAGACCACAGGCCAGACGAGCCTCCATCTCCGCTGAACTGGCCGCccgTATGGAGGCGCTGATGAGGCCTCCTCTGTTGTGAACCTTGAGGACTCTGTCGAACAGCACTGAGCGTTTCTCCTCGTCTGTACTCAACCCTTCCTCCAGCAGGTCCAAGGGCTCCGAGACGCCACCAGTGAAATCCACCAACGCATCCGCTGTGTTGCCCCCGTCCAATGCCTCGTAACAACCAtacatcTTGGCATAAGCCTTCTCCACCAGGGCGCTCCAGAACTCGTTGCTGTCACTGGAGTGACAATACACCAAGTTGCCGTTCGCAGTGGGCAACCGGTCGTCGATGACAACATCAATCCATTCTCCAAAGCGCCAGAAGCGGAAGTGGAAAATTCCGGCATAAGATTCCGGCTTCTCCTCATCCCATTCCTGGTCCTTATGATCCGGAATCACCTTTTGCCACAGAGTTTCTCTGGATGCCAGGGAGGAGCATGCAGCTACGAACCAACAGTTCCCCAGCTGGCCCTGGAGGAGGTCATGAGCACTGATACCATTCACAAACAACTTGGGGTTATCACACAGCTCCTTAGGTCTCTTCCAGGTGATGGTTCCTATGCGGTTGGTCTTGTAGAACAGAGACTGGTCCATAGCCGGAAACACAGAGTCTTCAAACAGGACTCGACGCTGCTGGCACTCCCTACGCAGGGAGGAATAGCCCTGGCTTTCATATGGCACCACCATCACCCTTGGAAGAGTTGACTCCCTCGATGACGTATTCGTTTCTGTCCTACTGGGGCTTCAGTCGGAGTGATCCCTTGTTCCCTCCCGGTGGCTGCTCTTCTGGTGCATGAGCTCCTCGGGACTCACTtgctgtctctttatctctctc

Function

NR:

description
PREDICTED: calpain-5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2179145 False 2726 TUCP 0.49 13 14622195 14655274
TU2179146 True 2723 TUCP 0.49 13 14622195 14655274
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110503819 slc35f2 coding downstream 24465 14592031 ~ 14597730 (-)
kbtbd3 kbtbd3 coding downstream 30266 14586940 ~ 14591929 (-)
LOC110503814 LOC106612890 coding downstream 36820 14567016 ~ 14585375 (-)
LOC110503815 dus14 coding downstream 72755 14547717 ~ 14549440 (-)
LOC110503811 stard13 coding downstream 102568 14404761 ~ 14519627 (-)
LOC110503824 NA coding upstream 30018 14624102 ~ 14686972 (-)
LOC110503346 LOC106580992 coding upstream 32533 14687807 ~ 14697439 (-)
LOC110503826 LOC106612881 coding upstream 48302 14703576 ~ 14720819 (-)
LOC110503827 LOC106612879 coding upstream 73689 14728963 ~ 14734638 (-)
rsf1a LOC106612877 coding upstream 85297 14740571 ~ 14760173 (-)
G1905350 NA non-coding downstream 301 14621680 ~ 14621894 (-)
G1905349 NA non-coding downstream 2786 14617161 ~ 14619409 (-)
G1905321 NA non-coding downstream 72257 14542122 ~ 14549938 (-)
G1905308 NA non-coding downstream 90813 14526414 ~ 14531382 (-)
G1905301 NA non-coding downstream 107441 14514549 ~ 14514754 (-)
G1905428 NA non-coding upstream 134696 14789970 ~ 14790397 (-)
G1905713 NA non-coding upstream 214127 14869401 ~ 14908388 (-)
G1905714 NA non-coding upstream 215447 14870721 ~ 14910363 (-)
G1905718 NA non-coding upstream 237378 14892652 ~ 14894189 (-)
G1905348 NA other downstream 823 14619663 ~ 14621372 (-)
G1904919 NA other downstream 407675 14180063 ~ 14214520 (-)
G1904877 NA other downstream 479467 14089722 ~ 14142728 (-)
G1904846 spg20 other downstream 578746 14042970 ~ 14043449 (-)
G1904408 NA other downstream 863551 13757828 ~ 13758644 (-)
G1905737 NA other upstream 285416 14940690 ~ 14941172 (-)
G1905741 NA other upstream 290724 14945998 ~ 14946447 (-)
G1905780 NA other upstream 428035 15083309 ~ 15084752 (-)
LOC110503349 LOC106612868 other upstream 601446 15252457 ~ 15298489 (-)
G1906115 NA other upstream 698666 15353940 ~ 15354573 (-)

Expression

G1905324(LOC106612883) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1905324(LOC106612883) Expression in each Bioproject

Bar chart with 19 bars.
G1905324(LOC106612883) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location