G1908551 (LOC106612827)


Basic Information

Item Value
gene id G1908551
gene name LOC106612827
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17230892 ~ 17233704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2182761
TCACAGAGCCAAGCTACAGGTTTATTACATACTAAGAGTGAGGTTTATACACATTCTTGGTATGATCCAtagcaaaaaacaaaacaagaacacATTTTTTGGGCGGGAAATTAACTCATTTGTGGGATGAAATGGAGTGTCCATGTATAATATGACAGAAGGGACATATCAACAAGCAGGGGAACAAGAGCATTCTCCATTCATCACCTATGAGAACCTAATACTGGTCCATTTATTCCCCTAGTTATTCTACGAGACTGCTCTAATAACTAGAATCTTAAGCGGTAGTCATCCACAAGAGGTCATCGGTTCTGACCTTAGCCCTTCAGGGATGACATGCCTGCTCTCATGATCTCATCCACCAACAGGATGTTGCTGGCTATTACCGTGCTGTGTACAGAAAAAAAACCAAATCAACATCAGTTTAATCCAAAGGGTCATTGATTCTTAAATCTACAGGGTAATACTGATATGAGATTTTAAAAGGGTGTGTTCTTCTTACCATGAATGAAGGAGTTGTTTCTTAACACTGTAGTTATCCCAAACCCCAGCTTCTGAAGCAACCATTGGTTCACCAGAGCTCAGGTCCACTCCAACCAGCTGACCACTCTCTTTGTACTCAGTCTGGAGTTTGACCAGGGTCTCCATTGGATCATACCCAGAGTTCTGAGCTAGTACCTTAGGGATGATGAGGAGGGCATCCGcgaaagcctgcacacccagctGAGCCCGGCCCTTCACTAACAATTTGTGCTTTATCAGAGCATCATGCACAGCCACCTCAAAGGCCCCGGCCCCTGACACCACGCAGCCGTCCTCGATGGCGTTCTTGACGGCCCTGAGCCCATCCCTGACTGCGTCTTTGATCTGGGTCAGGGTGTGTTTGTTGGGTCCCTTTACCAGCAGGGTCACTGACCGGGGGTTCCCACACTTCTCTATGAATGTGTACTTCTCCTCACCCTGTATGGGGGAGAAACCACTACATATTTAACTTCATGATAAACCACAACATTACATCTTTCACCACCATGATatcttatacacatttttacCAAATCATAGATTTTCATAGTATTGGAAAGAAGGGACAAGGCAAGCTGATAGGCCCCTTTAGTATCCTTACTCAGTGTGGTGAATTTGGACAGTGAttccacacacacaacaggagGAATTCTGTACCAACTGTTTGGGAAGCAGACTGGTATAGACTATTTATGACTGCTTTTTCTGGTCATGAGGTAAAGAACCAGCATGTTAACTCACCAGTGTGTGTTCATAGACCAGACCAGCCTGGCCCAGGCATTCTGGAGTGAGGTCTTCAAAAGAGTTCATGGCGATACCTCCACAGGCCAGGGTGAGTCTGAGGGGACGGGAAGAGACCGGGGGCAGACAGGTCAACAAAACAAAGTAAATAATTCAAAAGTAGTAACACAGACACATTGTATTCACTCCTCCACTGAGTAGGTGAGGCACAGGACTGCACTCACATTTAGTAAAGTAGCAGTGAAAATATGCTTTTGCATTGTATCGGACT

Function

NR:

description
T-complex protein 1 subunit zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2182761 True 1534 lncRNA 0.45 4 17230892 17233704

Neighbor

gene id symbol gene type direction distance location
LOC110503884 psph coding downstream 13389 17210966 ~ 17217503 (-)
LOC110503876 LOC106612831 coding downstream 143633 16993507 ~ 17087259 (-)
LOC110503880 LOC106612833 coding downstream 237599 16921107 ~ 16993293 (-)
LOC110503875 LOC106612835 coding downstream 317235 16833518 ~ 16913657 (-)
LOC110503864 vps53 coding downstream 639460 16559760 ~ 16591432 (-)
LOC110503885 chchd2 coding upstream 6518 17240222 ~ 17244470 (-)
LOC110503887 LOC106612825 coding upstream 40718 17274422 ~ 17276481 (-)
LOC118944080 LOC106612823 coding upstream 43850 17277554 ~ 17278524 (-)
LOC110503457 LOC106612822 coding upstream 46194 17279898 ~ 17281525 (-)
LOC110503890 LOC106581067 coding upstream 91890 17325594 ~ 17329423 (-)
G1908373 NA non-coding downstream 393781 16836742 ~ 16837111 (-)
G1908301 NA non-coding downstream 434252 16751127 ~ 16796640 (-)
G1908285 NA non-coding downstream 454081 16719356 ~ 16776811 (-)
G1908272 NA non-coding downstream 468851 16758103 ~ 16762041 (-)
G1908604 LOC106612819 non-coding upstream 72877 17306581 ~ 17309103 (-)
G1908606 NA non-coding upstream 76628 17310332 ~ 17314262 (-)
G1908714 NA non-coding upstream 290752 17524456 ~ 17531758 (-)
G1908777 NA non-coding upstream 339142 17572846 ~ 17573066 (-)
G1908789 NA non-coding upstream 348101 17581805 ~ 17582118 (-)
G1907951 NA other downstream 1069666 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1098330 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1186587 16036987 ~ 16044740 (-)
G1906218 NA other downstream 1717799 15512359 ~ 15513093 (-)
G1906198 NA other downstream 1730132 15500204 ~ 15500760 (-)
LOC110503924 LOC107554284 other upstream 1198320 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 1734358 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1926745 19160449 ~ 19162158 (-)
G1910539 NA other upstream 2099137 19332841 ~ 19333225 (-)

Expression


Co-expression Network