G1908999


Basic Information

Item Value
gene id G1908999
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17937713 ~ 17948050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2183267
ATGGGAAATTAAACTGATCACAAAAATGGCAACTAATGTAAAGAATGATTAAGTATGGTCCAAAGTGATGGGCATGTTTCAATACATGAATGGACATATAATGAACATGCCTTTTTTTATATGGTTACAGCTCACATGGAGGCTGTGCATGCAGCATGTACCCCTGACACCTGTGCAGGAAGTCACACACTTCAGTATAGGGAAACTTAACtcctggagtgttttttttttagataaagaGACTGTGTGTCATGCCAAATCCCCTGCCATAACACATATGACTAGTATGACAGCCCCTTGAGATAAATGGCTCTTTAGTACTCAATCACAGGATAAACATACCTATTTGCACCTCTTCCTGCTGAGGAGTGCATGACAGAGACATAAGGACTTCATCTGTACACCTCTTATCAAAAGTGGGCACACCTTTACATGCATTGTGTTCCCTGACTGTTGACAGAAAAAAAGAATGGGACAAATGGCATGATGTTTCATTGTGGTCATTGGCAAGTGGTATTAGATCATTCTACAGAAGGAAGTTGGTGTCAAATACATTATGACATGTCTGTCTGAAGCAAGCCTAACATAGCCTCTGTATGAAGAacaatgaagaagaaaaaactgACCTGAGGCACAATAGATGATACAGTCAGACACAAGGTGCCATCTAGTGGTATATTTACAAAGAAACAGGGACATTGAACATAAGGCCAATGACTATTTGTCTGTCAATTTTGAATAAACAAACACTGATAATCAAAGTAAACACAAACCTTAGAGCAATTTACCACACCACAAATATTTATTAAAAACAACATTGTTCTCAGACACATTTTCCACCAACTTCAAGTACAAAATCTCTTACCTAAACAAGTCACAGGGGCGCTTTGATACGTTTGACCTGTCCCATCCTAATTAAGGTCACAGGGGAAACACTGACCAAAACTAAGGTTCCTACCCTGCCACAATAATACAAGTGTTATTCCAGTTAGTTTTTTGTTACAAAAGCATGTGGATGGTGTCAGAGAGACATACTTGAATAGCCTACTGGGCGGTGACATGAGGGAATATCAATATGAACTATTGAACAAATAGGTGGTCATATTGTTGGAAATGATGTGGTATACTTCAGCATTTCAGAAATACCAATTTAAAAAAGTCTGACCGAAAACAAAAACaggtggatttttttttattcaagtGTTTACATTATGATATTATATTACTTTCATGTCAGCTAAGATGATTCAGAATAAGCTGCACATTTGAGCTCCTCACAATGCAGACTTTGTGTCGACGTAACTTGTTTTTCCCTCTTAAATCCTAAAAGCTATTCTGACACATGTTCCAGAAGTCCATTTGACATCTAGATGTGATATCACTCACTTCAATTTGTAaaacagtaaaaaatatatatattaaaaataaagccTTTAGTCCTACTCTTTCTTTTGAAACGGCCCAAGATGAAAGATTGCTTGCACTATAGGACATTAATAACACCTGCGTACAAGAGCCAGCACATCATGCTAGAGAGAGCCATCCAGAGAAAAAACAAGAATGTTCATTTGCTACCTTTAATTATCTTCAACATCAACTGTATGAAAGCATGCAAAAATGACTTCTTTAGAATGGTACATATTTACATTGTAACAACCACATTTCAGCTCAATACATAGGTGTAATATTTGGAAAACACAGAGCTAATAGTACAAAAGGCATTCAGACCATTATgagtaatatagtacagtacatcaTGAACAGACAATGAAACCCTCTGTTAACAGCAGACACAAACATCACGCAGATGGAATAAGACAAAAGTTAAAAACCTAATACATGGTTTGTACTGTAGTTATCACAAATCTTTCTAAAAGACTGTAAGGGTGAGCTCTTTCATTTGGATCTCTCTTCAAATATATTACAttaatattacatattatatgaaGATACAGCAAAGAGTTTGCTTTGAACAGGTCTGTCCCCTAATTTAAACAGGTCTATCAGAAAAAAGGGTTTACCAGCAGCCCTCTGCAAGTGCACCATCATCTTCAGTAAGGTCCTCCAACTCTCCTTCTCCGTTTCCATCCAATTCTCCTTCTCTGCTTGATTTCCTCAATGAAGGATGAACCTCGGTTTCCAGTCGCCCCCAAGAGTCCGCAAGGAGACCTCCTGGAGCAGACATAGACCTCTCTGCCCTCCTGTTGTGACACTCAAAGGGGTTACTAAAAGACCTCTTCCTCAGCATGGACTTCACCAGGATCTAACGTGGGGAG

Function

NR:

description
PREDICTED: calcium/calmodulin-dependent protein kinase kinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2183267 True 2276 lncRNA 0.38 3 17937713 17948050

Neighbor

gene id symbol gene type direction distance location
LOC110503460 NA coding downstream 10779 17923724 ~ 17926934 (-)
wu:fc27b11 NA coding downstream 78317 17855290 ~ 17859396 (-)
LOC118944000 LOC106612753 coding downstream 87284 17849473 ~ 17850429 (-)
LOC118943999 LOC106612753 coding downstream 94049 17842708 ~ 17843664 (-)
LOC110503459 LOC106612753 coding downstream 100688 17835939 ~ 17837025 (-)
LOC110503905 LOC106612802 coding upstream 15208 17963258 ~ 18015869 (-)
ca4 ca4 coding upstream 41179 17989229 ~ 17999629 (-)
LOC110503907 LOC106612799 coding upstream 89538 18037588 ~ 18042701 (-)
LOC110503908 LOC106612797 coding upstream 113947 18061997 ~ 18069560 (-)
LOC110503909 LOC106612796 coding upstream 127166 18075216 ~ 18081425 (-)
G1908996 NA non-coding downstream 3132 17933975 ~ 17934581 (-)
G1908932 NA non-coding downstream 83607 17847931 ~ 17854106 (-)
G1908929 NA non-coding downstream 93597 17837139 ~ 17844116 (-)
G1908874 NA non-coding downstream 160853 17771194 ~ 17776860 (-)
G1908849 NA non-coding downstream 205364 17732132 ~ 17732349 (-)
G1909024 NA non-coding upstream 53183 18001233 ~ 18007350 (-)
G1909345 NA non-coding upstream 103804 18051854 ~ 18052194 (-)
G1909357 NA non-coding upstream 137997 18086047 ~ 18086265 (-)
G1909407 NA non-coding upstream 217821 18165871 ~ 18166177 (-)
LOC118944080 LOC106612823 other downstream 659303 17277554 ~ 17278524 (-)
G1907951 NA other downstream 1776487 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1805151 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1893408 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2424620 15512359 ~ 15513093 (-)
LOC110503924 LOC107554284 other upstream 483974 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 1020012 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1212399 19160449 ~ 19162158 (-)
G1910539 NA other upstream 1384791 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1542667 19490717 ~ 19491608 (-)

Expression


Co-expression Network