G1909483


Basic Information

Item Value
gene id G1909483
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18326648 ~ 18411029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2183822
AGCCATGAGAGAGTTGACATCATTCTTCTCTAGGCTCACTGGGTTACCCTGGGATGAAGAGGAATAGCCCCTTTCCCCACCCCGGGCTCCTTTGGGTCAGAGCAGCTCAAAAGGAAGCCTTTTCATTTGTCTTTGATATTCAGGTATGTTTTGCTATGTGTTGGTCTACGAACAGGCTCCTTGAGAACACACTGAAGTTAGTGATACCCTCCCTGCCTTGCTTTTTTGCTGCAGTGTGCCTGCCTGTTCAATTTGTGAAATTGACAAGAACATATTATAGGATGCCATTTTTCTGCTTAACAGTGTTACTAGTTGTTTTTATTAaagaaaattttaaaaaaaatactaaatgtaTACAGATTTAATAGTGTATTTTTATTACAGGAAAATGAATTCTTATTTATTTTCAAACTAGATAGACTTCCTGATATTGTTTTAAACTGTGTTGTGTAAACTATTTGAAGATGAAATGTATTTATGAGGATAGCCTAGTTATGGAAAATATTTTAGATTGGTTCAGAATCAAAGATGGATTATTATCTTGAGAAACCCTGTCTTGCTGTTAGTTATTGAATGAGTCTTATTAAGCTTGTACACAGGAGCGTTGAACTAATAGGTAGCAAGAGAAAAATTATACTGTCTCTTTAAATCTATTTTGTCACCTGTGATTGGACAAGATGAAGAACCTCTGAGGTCTTGTGGTAAGATAGCCTGCTTTGTTTCTTTAACCCTTTGAGAGCTTGAGCAGAATGGTTTTATGAAGAATCATAATGGAGAAAAATGGAGTTGGATCACTTGACAAGTTTACacacaccaccgttcaaaagtttggggtaacttagaaatgtccttgtttttgaaagaaaag

Function

NR:

description
PREDICTED: uncharacterized protein LOC106612747

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2183822 True 868 lncRNA 0.36 2 18326648 18411029

Neighbor

gene id symbol gene type direction distance location
LOC110503909 LOC106612796 coding downstream 245223 18075216 ~ 18081425 (-)
LOC110503908 LOC106612797 coding downstream 257088 18061997 ~ 18069560 (-)
LOC110503907 LOC106612799 coding downstream 283947 18037588 ~ 18042701 (-)
ca4 ca4 coding downstream 327019 17989229 ~ 17999629 (-)
LOC110503905 LOC106612802 coding downstream 353458 17963258 ~ 18015869 (-)
LOC110503924 LOC107554284 coding upstream 21439 18432024 ~ 18434798 (-)
LOC110503923 LOC106612789 coding upstream 26509 18437538 ~ 18447553 (-)
LOC110503925 LOC106612788 coding upstream 39645 18450674 ~ 18455598 (-)
LOC110503926 LOC106612787 coding upstream 42962 18453991 ~ 18465242 (-)
LOC110503927 kiaa0100 coding upstream 54370 18465399 ~ 18494798 (-)
G1909484 NA non-coding downstream 16162 18309787 ~ 18310486 (-)
G1909496 NA non-coding downstream 38104 18286714 ~ 18288544 (-)
G1909495 NA non-coding downstream 40473 18283361 ~ 18286175 (-)
G1909470 NA non-coding downstream 59000 18267313 ~ 18267648 (-)
G1909468 NA non-coding downstream 61791 18264654 ~ 18264857 (-)
G1909572 NA non-coding upstream 45507 18456536 ~ 18457218 (-)
LOC110503933 txndc17 non-coding upstream 150913 18561930 ~ 18566131 (-)
G1909868 NA non-coding upstream 263050 18674079 ~ 18674678 (-)
G1909869 NA non-coding upstream 264648 18675677 ~ 18677393 (-)
G1909902 NA non-coding upstream 329036 18740065 ~ 18740282 (-)
LOC118944080 LOC106612823 other downstream 1048238 17277554 ~ 17278524 (-)
G1907951 NA other downstream 2165422 16158846 ~ 16161226 (-)
G1907922 NA other downstream 2194086 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 2282343 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2813555 15512359 ~ 15513093 (-)
LOC110503944 LOC106612932 other upstream 557033 18968062 ~ 19185772 (-)
G1910398 NA other upstream 749420 19160449 ~ 19162158 (-)
G1910539 NA other upstream 921812 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1079688 19490717 ~ 19491608 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G105112 NA non-coding NC_056713.1 CM032082.1 9734203 ~ 9738624 (+)