G1909845


Basic Information

Item Value
gene id G1909845
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18773602 ~ 18775173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2184231
TGGGTGGGGGGATTGGAGGATGAGTTTAACTGCAGAGATGAGGTTAAAAGTAGCACTACTGTACTTTTAATGCTGTAATGTGTTATACAGAGTATGtccagttccatttaaaatgccCAAGTATTATCTCCATCAAATTATCATGTTCTCAACTTCTCACTCTCAGAAGAAGGTTCTGCCTCATATTTGTTGGTCTGTTTATATCTCAAGACCCATAGTTCATATCCATTTGGGGTTTAAGATTTTTGATAAACTGTTCATTTGCACAAAATAGCTTCTGAACTATGTTTCCATGACCAAATAATGTATGCCATCTTCTCTTTTAGCTAATCTATAGTCTTATATTAACTTGTTTTCATTTTGCTCGTAGTCAATGGTGAAACATGGTGCATTGTACTTCCGACCCCATTTGAACTTTGAATACTGTATGACTGTATAACTTGAGATCCCTCTGTACACACTTTTCTAAACTTGAATCATTGGGGCTGGAAAATGCAAACATATTGAAAACTCAGATATGTGAATACACTGTACAATGGTTACTGTGTGCGGACACTTTGACGTTTCTCCTTTattataacagtaatataatatgtaattcaATACTTTTTATTGAATTATTGGTATGTTATCTTGATCAAAAGTTGTTTATTCATGAGATgtaatatagtttatatatatagTTTATTGTATATGGTGTTTGCTATTGCACCCTTTGAAATTGACAAAATGTCAAAGGTAATGTCTGGGCTGCTTGCATGTACAGTCAGAGATGGGCAAAGATTACAAGATACAATTACAGAATACAATTACAGAATACCATAAagatcaatgtatcaaaataaactacaaaatacttgtattttgaaatgtatttaattaaatgacatgtattttgtattttaaaatacagaaatagatTTGCAAGTTGCTGGCCCGAACTgcaacaacattctcagtaacggttacagaaatgttttacttgctatgactgtgatatgttgttgtttatctaccttaggtGAATGCACTGACTGCATATGTGAAAATGAACATATCAAACTGAACTGCAAAGTACACTGTGTATTATTATTGGCCTTGTTTTGGGGTCATGTCTAGAATGGATACAGCTTAACCTCATTTTCTAACCTTTTCTAACCTaagttaattctcctaacctactgCGTAAGTCCTCCTAAACCTGCTATGAAAAGTCAATTTTGACAAAGCTGTGTCGCTTTTACACAAAATCTTGTTTCGGggcagagctcattagaataatactctGCTTGCTTTTCAACTGTCCATTTTTACATACACATTTATgtttagttcatttagcagagcACACCATAGTGCTGTTAGACTTCTGATACCAATGCAAGGTGAAAAGAAGCCACAAAATGGTGAACCGCTATACAAAATGAAAATACGAATTACTGTACAGCTCTTGAAAGTatcttgttacaaaatacattggaGTGTAGTTCAGCCCAGTGTAATACAAATGACAAAATACATCTCTGTACAGTTTCATATAGGAAAATAAAATATGTAATCATCTTAACGgac

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2184231 True 1572 lncRNA 0.34 1 18773602 18775173

Neighbor

gene id symbol gene type direction distance location
slc47a3 NA coding downstream 8906 18757346 ~ 18764696 (-)
LOC110503933 txndc17 coding downstream 207471 18561930 ~ 18566131 (-)
LOC110503929 LOC106612785 coding downstream 212238 18504076 ~ 18561364 (-)
LOC110503930 LOC106612786 coding downstream 272487 18495268 ~ 18501115 (-)
LOC110503927 kiaa0100 coding downstream 278804 18465399 ~ 18494798 (-)
slc13a5b LOC106612936 coding upstream 83 18775256 ~ 18787927 (-)
LOC110503941 LOC106612935 coding upstream 14046 18789219 ~ 18794812 (-)
wdr81 wdr81 coding upstream 20081 18795254 ~ 18813800 (-)
LOC110503944 LOC106612932 coding upstream 196508 18968062 ~ 19185772 (-)
LOC118944057 NA coding upstream 622181 19397081 ~ 19398144 (-)
G1909915 NA non-coding downstream 6840 18766454 ~ 18766762 (-)
G1909914 NA non-coding downstream 7155 18766216 ~ 18766447 (-)
G1909911 NA non-coding downstream 18116 18754988 ~ 18755486 (-)
G1909902 NA non-coding downstream 33320 18740065 ~ 18740282 (-)
G1909869 NA non-coding downstream 96209 18675677 ~ 18677393 (-)
G1909924 NA non-coding upstream 35898 18811071 ~ 18811495 (-)
G1909927 NA non-coding upstream 39528 18814701 ~ 18815028 (-)
G1909930 LOC106612933 non-coding upstream 44080 18819253 ~ 18825843 (-)
G1909960 NA non-coding upstream 99550 18874723 ~ 18874925 (-)
G1909971 NA non-coding upstream 105514 18880687 ~ 18880959 (-)
LOC110503924 LOC107554284 other downstream 338810 18432024 ~ 18434798 (-)
LOC118944080 LOC106612823 other downstream 1495192 17277554 ~ 17278524 (-)
G1907951 NA other downstream 2612376 16158846 ~ 16161226 (-)
G1907922 NA other downstream 2641040 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 2729297 16036987 ~ 16044740 (-)
G1910398 NA other upstream 385276 19160449 ~ 19162158 (-)
G1910539 NA other upstream 557668 19332841 ~ 19333225 (-)
G1910651 NA other upstream 715544 19490717 ~ 19491608 (-)
G1910996 NA other upstream 915893 19691066 ~ 19691513 (-)

Expression


Co-expression Network