G1909930 (LOC106612933)


Basic Information

Item Value
gene id G1909930
gene name LOC106612933
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18819253 ~ 18825843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2184329
CCTCACCGGGCTCCGCCATTGGGCCCAAAGTCAATCTGCGCCACAGGACACTACTGTCATCAGCATTATTAATGACTTTTATCCCTGCTCTTATAATTACCTAAACCACCCCAGCACAACCCCCTGCTACCGTAGCATCCATCCCTATGATAGGATAATAATAAACTAAGTCTGTTGACGGTTATCACACCCCGCCAGCCCTGCCTGGACCACCCTTCCTCTTTGCTCCTCCCTTGCTACACCTGCACCTTACCCAAAATGGCGTCCTTTTCTCGGGCCTCCAGGTCAGCGATGGAGATGAAGTTGCACTGCACCATGGGTACGTCCTGGGTGTCCTCACAGGGGATGATGGTGGATTCTCCATTTAGGGTCATCTCATAGTCATTCTTCAGGGACGAGTACTGCTTGTTGGCGATCTTCAGTGATCCCTTGGAGATGTAGAACACCTTGCTGTAGAACTTGTCCACCTCCTGGGTAAAGGCAGTCACTCTGATCTCTCCACTTTCATCCACAATCTCCATAGAGAACAGCTTGCCGTCCCCACGAGAGTTGCTCCAGGTGCGGATGCCGCTCTTGTTGGTGACACGTGCTCGGATGGTCCACTTTGACTGGTAGGGGTTGAGGCTGGCAATGGGCACGACTTTGGAGGATCCCCCAGGAGTGCTGGGCATTGCAGACAGAGGCATGGCCTTCTTCCCCCCAAACTCTCTGCTGGGACCTTTGTTCATGGTGCCATAATTTCCATTCGGGGGCTGCAGGGGGTGGACTGAGGGATTGGGGGCTGACTGTGGGGCTTTACTCTGACCTTCCACGTAAGGCGTGGGCTCTCCGATCTTTCCAGCCACCTCATCAGCAGACTTCACCACCTCCATGTCTAATATGACCACCACATGCCGTCCATCCTTTAGGACATTGGTCACATTCCTCTTCAGCTGACAGATACAGTTTTGGGCCAGTCGGTTGTCCTCAGCCATTGGGTTGAGTTGGGTGGAGAGCATGAACGAGGACATTGTGTGCTGTCCATCACTCATCATCAGACGAAAGCGGGCTGGTCCACTGCCTCCATCCAGTTTACGGATGTTCACTAATTGAAGAATGGGGTTCGGTAAATCATTAGAGCCTTTGGTTAGATCCGCTATCGCTCCCTTTGTCAGCATGTTATTCATGTTGAAGCTATGTAGAGTGAAAATGTACGTTTTAAAGCGAACTCGGAGAGGACAATCTCACTTCTACAGTGACAGCGCTTCCTCCGTGTTGTGTCTGTGGCGC

Function

NR:

description
replication protein A 70 kDa DNA-binding subunit-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2184329 True 1269 lncRNA 0.52 10 18819253 18825843

Neighbor

gene id symbol gene type direction distance location
wdr81 wdr81 coding downstream 5453 18795254 ~ 18813800 (-)
LOC110503941 LOC106612935 coding downstream 24441 18789219 ~ 18794812 (-)
slc13a5b LOC106612936 coding downstream 31326 18775256 ~ 18787927 (-)
slc47a3 NA coding downstream 54557 18757346 ~ 18764696 (-)
LOC110503933 txndc17 coding downstream 253122 18561930 ~ 18566131 (-)
LOC110503944 LOC106612932 coding upstream 145838 18968062 ~ 19185772 (-)
LOC118944057 NA coding upstream 571511 19397081 ~ 19398144 (-)
LOC118944022 NA coding upstream 672719 19498562 ~ 19502464 (-)
LOC110503947 LOC106613039 coding upstream 680335 19506178 ~ 19517866 (-)
tsr1 LOC106613038 coding upstream 700053 19525896 ~ 19542981 (-)
G1909927 NA non-coding downstream 4225 18814701 ~ 18815028 (-)
G1909924 NA non-coding downstream 7758 18811071 ~ 18811495 (-)
G1909845 NA non-coding downstream 44080 18773602 ~ 18775173 (-)
G1909915 NA non-coding downstream 52491 18766454 ~ 18766762 (-)
G1909914 NA non-coding downstream 52806 18766216 ~ 18766447 (-)
G1909960 NA non-coding upstream 48880 18874723 ~ 18874925 (-)
G1909971 NA non-coding upstream 54844 18880687 ~ 18880959 (-)
G1909982 NA non-coding upstream 60987 18886830 ~ 18887147 (-)
G1909993 NA non-coding upstream 70198 18896041 ~ 18896274 (-)
G1909996 NA non-coding upstream 71684 18897527 ~ 18897808 (-)
LOC110503924 LOC107554284 other downstream 384461 18432024 ~ 18434798 (-)
LOC118944080 LOC106612823 other downstream 1540843 17277554 ~ 17278524 (-)
G1907951 NA other downstream 2658027 16158846 ~ 16161226 (-)
G1907922 NA other downstream 2686691 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 2774948 16036987 ~ 16044740 (-)
G1910398 NA other upstream 334606 19160449 ~ 19162158 (-)
G1910539 NA other upstream 506998 19332841 ~ 19333225 (-)
G1910651 NA other upstream 664874 19490717 ~ 19491608 (-)
G1910996 NA other upstream 865223 19691066 ~ 19691513 (-)

Expression


Co-expression Network