G1911744


Basic Information

Item Value
gene id G1911744
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 20259377 ~ 20264263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2186339
cttcagaattttttttgtaaaaatgttttatgAACCAATACAAAATATGTATGGGAACATGAGGAAACCTTTCTTTACTACACATAAATGTTGCCCAGGTACAGAGAGACTAAAGATTTGACCTCAAAACAACTAACTGGAGCAATGAACAACCAAAACGTTCTAGGCATCAAACATGTTCTCCATCCAAACAGCCAAGAAATGTTGGGGGTTAATCAGAAAACTTAACCACTGCAATTATACCACCTGTTTtttgaaaacatctgaaaatgTGACTGACATGCATCATATTCAGGATGCTAATACACCATTAGAAAGTAAATAGATGCTATTTAAGTCTCTACACAATCCGTATCGCGGAAGTTCAAATTTACAACGTGATtcaaatttaaaggcaatgttcctgcaTTAGAGAAGaccgcattcacggtaaacgctgtaTGTGTCAGCTCAAACGGAAATGACCTTAACATTTCTAGCGCACAATCTGTAACGCGATCAGCGATACAGATTCAATAGAGCCTTTAGTCTCCATTTTTTGTGTGATTACTTGTTCTTTATGTCTGGGGGAAAAACAGATGatacgttttactgtggatataaggATTTATCAATAACCACCCTTGTATTTTGctggacactgactgtacaaGTGATATTGTCTGATTAACAAATCTAGTTCTTTCTTTGTGAACTAGGTCTATGCAAAATAATATGTAACATTTAACAGTGCACCATATATTAAGAACACAAACATATACaactgagaaaaaaatatatatattttgatttgataacTTTCTGAAATGTGTAGTATTCTTGGGGGGCTTTCACTTTGCATTTCACCTGAGATGCAAAACACAAGATTCAACATGAACCTGAGAAAGTGGAAACACATGGACTACATGTCaaatacactcagtggccagtttaatAGGTACACTCATCTAGTACTGGGTCGAACCCCCATTatctccagaacagcctgaattcttcagggcatggaaacattgctcaattggtatcaagggccATAATTTGAGCCAGGAAAACATTCTCCACACCATCACAACACTGCCACCAGCATGTACCGTTGAcgccaggcaggatggggccgtggactcatgctgcttacacctaatcctgactctgccatcagcatgacgcaacagaaGCCGGGATTCGTCaaaccaggcaatgtttttccactcctcaattgtccagtgttggtgatcgcttGCCCattggagccgcttcttcttttAAGCTGATAGGAATGGAACCCAGTGTGGTCATCTGCTCCAATAGTCCACCCGTGACAATTACCGACGTGTTGTGCATCCCGATATGCCGTTCTGCaaaccactgttgtactgcgccgttacagtgccttgcgaaagtattcagcccccttgaactttgcgaccttttgccacatttcaggcttcaaacattgatcaatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttctatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagaggttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagttttttatttgttaaaaaagtttgaaatatcctataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaaatacagttttatatctttatgtttgaagcctgaaacgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacttgccTTTTTGTGgccttgcacgattcttgccatccTCCTTCAACAAGCGGTTTTCGCcaacaggactgccgctgactttatgttttttgtttgtcgcaccattctccttaaaccctagacactgtcgtgcttGTAAAAAAAACAGGAAGCTGGCCGTTTCTGAGAAACTGGAATGGCGTCgggcaccgacgatcataccacgctcaaagttgcttaggtcacttgtttttCCCACTCTAACGTTCAATTGagcagtaactgaatgcctcaatgtCTGTCTgccaactgtatatactgtagcaagCCACGGTCATGTGactctgtctgtaggagcaaaccATTTTCAAGAATGGGATGGTGTACATAATAAACCTTCCACTGAGTGTATACTgaaatcaaaaacaacacttaatTTGAATCCCTACAGCGATCATTTCAATTGTATCCAGAATAAAACATTGAAGATTAACAAAACAAAAGCAAGTTCAGAACTAATCAATACACTTTGAGATTAATATTGATTTGCAAATTTTAATTTGTTATACTGGTATCGGTTATGTTCTGCATCACCCTCAAGCAATTCAATGAAATAAACATCAGATCCCCAGTGCCGTTTTGCTTGTTTTACTTTTCCCAAAGTGTGGCGAGCCTTAGCCACAATTGCAGCACATAACCTTATAAATACAACTAAAATTGATTTagcaaataaattaaatacaccTTGCCTACCTTGTAAATTCTTATTGGACAGAAATAGATTGTCCGTAAATAAAATCATTAATACTACTTAGCTTGTTTGTTATAAGGAGCTGTTTTTTAAATAGAAGCAGCCATATCATTCAGTTATGATTCCAATTATTCATCCAAACTGAAAATAACTTCAACTTGTTATTCCAGTTCTTAGTACTGTCTGATTTATGAGTTACATGTGAGTAGAGAGTAAGACCACCACTACTACAGAGAGATTCATATACTAAGATATAGTGTGACACTGTTGACATCGTACTGTATACCCTTTAAATAAAGGAAGGCACTGCATGTAGTCCTTCACTCTTTTTTCTTCATTATTATGATATATTCCAAAGCAAAGTTGAATCATATTGCTTTAAGGCAGTGGCTGTCCTTTTAATTCATGTATTTGGAGTTGTTTTGTCTATCACACTGTTATATCCAATACATCCATTGACTAATGCACCATGGAAAGACAAAAGCAGGAACTTCAATATGCATTACAGGGATTCCACAGCAATCTGTACATTTACTTCAAAAGCTGAAACATGGCAGAAATGGAAACCATGCTAGTCATTCCCCATTCAAAACTTATAGGGGATCTATAATAACTTATTATTCACAGACACGATTAGGAATGCTCATTGAGCAATGACCATTAGTTGTGTGTTACTTTTtctaaattgaaaacaaaacattttaacaaaacaataaGTCATGCAAAAATGATATTCAAAGTGTATCATAATATCCGTAAGATATACAATGGTAGTCAAAATAATACATACAGAATTCCTTGTGTACTGGCTACTGTTTGAaaaattaaaatgttttaaacatcatTACAATGAAAACGTCTTCAATCTAAAGTATAAGAAAACATATTTTCTTCCCTTTCATATTGAGATATATTCCTCTCAATAGCAACCCGAGTCAACAGATTAGATAAAGGCCTAAGACAACAATAAAATCGTGTTTGAAGGTCCTTGTAAGGTTACTAAATATATATTCAATATATTAAAGTCAGTATATTATTCAAGAACAAAATCAAATTGGTTTTATCTGTAGAAGATAATTATTTGAACTGGATTTGACCCTTTGCTGAAAACACTGGGTAATATATGCACTGTATTTGAACACGTACAAGCATTACTATTACATTGGTCCTTCACTGACCATTGAGGGTATGAGTATGAGGACCCAGAGTAAACCATATTGTAGCGACCTTAGCCCAACACCTAGGGACCTCATCAAGGGGATCGGACCTCTTGGTATAACAGTTAAGGTGTTGGCTTAACAGTTGCTGGACCAGGGTAGTCCCCTGGTTGGGACTACCCCCCGAATTCACTATAATATCATGATGTTGAAACAACACAACAGCCTGTTGCCCCGACCAACATCAGACAGACAAACCAACAATGCGTATGACCATGGCAGCAACTCCAGTCAGTCTTTTAGCCACAGAACAAACATAAAAGGGATGTTTCAGTATGTCTGATAGAGCAGGAGAGGTCATATTTATGCATGAGTTAAGACGGACAGTATAGTTTGATATTGATGAGAGCTGTTTACTATAGATTTTAGATAGTCTGGAAATGACTCATATGTGTTGTTGTCTGCTTCTACAGTACACAGCAGAGAGAGTGCTTCTAAAAGCCTGGTACACAAGCTAAAATAGAGCTGCAGGACAACTAGAGAAGAAGCGCTGTGTCATTCAATCTCCTCTGAAAGCTAACTGCAGCAAAAAGGATCTGGTGGAGTCGACAGGCTTGAGGGGAAAAAAGAAAACAACAATTACGAAAGAAATAGAACAAGGCACAAAATTGTCTGTAAAATAATTGAACTGTACAGAATGGGCCCCAGCAGTCCAGGAGAGGTTGGATGGACAAATCCACGACAAAGCAATGAAGCCTCCAACTACTCATCCACTctaatcctcctctcctctagagtTCTCATCATTCTTCtcatcttctcttctcctttccccaCCTCTCATCTTTCCTTCTCAGCTGCACCAGTTCGACA
>TU2186340
TTTCACATTGATATCTTTTTATTAAGACAAGTACTcttcagaattttttttgtaaaaatgttttatgAACCAATACAAAATATGTATGGGAACATGAGGAAACCTTTCTTTACTACACATAAATGTTGCCCAGGTACAGAGAGACTAAAGATTTGACCTCAAAACAACTAACTGGAGCAATGAACAACCAAAACGTTCTAGGCATCAAACATGTTCTCCATCCAAACAGCCAAGAAATGTTGGGGGTTAATCAGAAAACTTAACCACTGCAATTATACCACCTGTTTtttgaaaacatctgaaaatgTGACTGACATGCATCATATTCAGGATGCTAATACACCATTAGAAAGTAAATAGATGCTATTTAAGTCTCTACACAATCCGTATCGCGGAAGTTCAAATTTACAACGTGATtcaaatttaaaggcaatgttcctgcaTTAGAGAAGaccgcattcacggtaaacgctgtaTGTGTCAGCTCAAACGGAAATGACCTTAACATTTCTAGCGCACAATCTGTAACGCGATCAGCGATACAGATTCAATAGAGCCTTTAGTCTCCATTTTTTGTGTGATTACTTGTTCTTTATGTCTGGGGGAAAAACAGATGatacgttttactgtggatataaggATTTATCAATAACCACCCTTGTATTTTGctggacactgactgtacaaGTGATATTGTCTGATTAACAAATCTAGTTCTTTCTTTGTGAACTAGGTCTATGCAAAATAATATGTAACATTTAACAGTGCACCATATATTAAGAACACAAACATATACaactgagaaaaaaatatatatattttgatttgataacTTTCTGAAATGTGTAGTATTCTTGGGGGGCTTTCACTTTGCATTTCACCTGAGATGCAAAACACAAGATTCAACATGAACCTGAGAAAGTGGAAACACATGGACTACATGTCaaatacactcagtggccagtttaatAGGTACACTCATCTAGTACTGGGTCGAACCCCCATTatctccagaacagcctgaattcttcagggcatggaaacattgctcaattggtatcaagggccATAATTTGAGCCAGGAAAACATTCTCCACACCATCACAACACTGCCACCAGCATGTACCGTTGAcgccaggcaggatggggccgtggactcatgctgcttacacctaatcctgactctgccatcagcatgacgcaacagaaGCCGGGATTCGTCaaaccaggcaatgtttttccactcctcaattgtccagtgttggtgatcgcttGCCCattggagccgcttcttcttttAAGCTGATAGGAATGGAACCCAGTGTGGTCATCTGCTCCAATAGTCCACCCGTGACAATTACCGACGTGTTGTGCATCCCGATATGCCGTTCTGCaaaccactgttgtactgcgccgttacagtgccttgcgaaagtattcagcccccttgaact
>TU2186341
cttcagaattttttttgtaaaaatgttttatgAACCAATACAAAATATGTATGGGAACATGAGGAAACCTTTCTTTACTACACATAAATGTTGCCCAGGTACAGAGAGACTAAAGATTTGACCTCAAAACAACTAACTGGAGCAATGAACAACCAAAACGTTCTAGGCATCAAACATGTTCTCCATCCAAACAGCCAAGAAATGTTGGGGGTTAATCAGAAAACTTAACCACTGCAATTATACCACCTGTTTtttgaaaacatctgaaaatgTGACTGACATGCATCATATTCAGGATGCTAATACACCATTAGAAAGTAAATAGATGCTATTTAAGTCTCTACACAATCCGTATCGCGGAAGTTCAAATTTACAACGTGATtcaaatttaaaggcaatgttcctgcaTTAGAGAAGaccgcattcacggtaaacgctgtaTGTGTCAGCTCAAACGGAAATGACCTTAACATTTCTAGCGCACAATCTGTAACGCGATCAGCGATACAGATTCAATAGAGCCTTTAGTCTCCATTTTTTGTGTGATTACTTGTTCTTTATGTCTGGGGGAAAAACAGATGatacgttttactgtggatataaggATTTATCAATAACCACCCTTGTATTTTGctggacactgactgtacaaGTGATATTGTCTGATTAACAAATCTAGTTCTTTCTTTGTGAACTAGGTCTATGCAAAATAATATGTAACATTTAACAGTGCACCATATATTAAGAACACAAACATATACaactgagaaaaaaatatatatattttgatttgataacTTTCTGAAATGTGTAGTATTCTTGGGGGGCTTTCACTTTGCATTTCACCTGAGATGCAAAACACAAGATTCAACATGAACCTGAGAAAGTGGAAACACATGGACTACATGTCaaatacactcagtggccagtttaatAGGTACACTCATCTAGTACTGGGTCGAACCCCCATTatctccagaacagcctgaattcttcagggcatggaaacattgctcaattggtatcaagggccATAATTTGAGCCAGGAAAACATTCTCCACACCATCACAACACTGCCACCAGCATGTACCGTTGAcgccaggcaggatggggccgtggactcatgctgcttacacctaatcctgactctgccatcagcatgacgcaacagaaGCCGGGATTCGTCaaaccaggcaatgtttttccactcctcaattgtccagtgttggtgatcgcttGCCCattggagccgcttcttcttttAAGCTGATAGGAATGGAACCCAGTGTGGTCATCTGCTCCAATAGTCCACCCGTGACAATTACCGACGTGTTGTGCATCCCGATATGCCGTTCTGCaaaccactgttgtactgcgccgttacagtgccttgcgaaagtattcagcccccttgaact

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2186339 False 4852 lncRNA 0.39 1 20259377 20264228
TU2186340 False 1454 lncRNA 0.40 1 20262810 20264263
TU2186341 True 1419 lncRNA 0.40 1 20262810 20264228

Neighbor

gene id symbol gene type direction distance location
LOC110503959 ncam1 coding downstream 199474 19941892 ~ 20059903 (-)
LOC101268962 LOC106581153 coding downstream 318065 19911119 ~ 19941312 (-)
LOC118944068 LOC106581084 coding downstream 349576 19907159 ~ 19909801 (-)
LOC110503955 LOC106613029 coding downstream 354607 19897004 ~ 19904770 (-)
pih1d2 pih1d2 coding downstream 362484 19894090 ~ 19896893 (-)
LOC110503963 LOC106613022 coding upstream 14729 20278992 ~ 20324314 (-)
LOC110503964 LOC106613021 coding upstream 65730 20315054 ~ 20405167 (-)
LOC110503968 NA coding upstream 191073 20455336 ~ 20458492 (-)
LOC110503970 LOC106613014 coding upstream 219002 20483265 ~ 20552148 (-)
LOC110503972 LOC106613013 coding upstream 402618 20666881 ~ 20676630 (-)
G1911721 NA non-coding downstream 30049 20227628 ~ 20229328 (-)
G1911321 NA non-coding downstream 162928 20096220 ~ 20096449 (-)
G1911307 NA non-coding downstream 172544 20086625 ~ 20086833 (-)
G1911069 NA non-coding downstream 447549 19811544 ~ 19811828 (-)
G1911844 NA non-coding upstream 163960 20428223 ~ 20428569 (-)
G1911842 NA non-coding upstream 184077 20448340 ~ 20448804 (-)
G1911841 NA non-coding upstream 185220 20449483 ~ 20450649 (-)
G1911899 NA non-coding upstream 263440 20527703 ~ 20534902 (-)
G1910996 NA other downstream 567864 19691066 ~ 19691513 (-)
G1910651 NA other downstream 767769 19490717 ~ 19491608 (-)
G1910539 NA other downstream 926152 19332841 ~ 19333225 (-)
G1910398 NA other downstream 1097219 19160449 ~ 19162158 (-)
LOC110503944 LOC106612932 other downstream 1286147 18968062 ~ 19185772 (-)
G1911862 NA other upstream 196405 20460668 ~ 20461437 (-)
G1912470 NA other upstream 708416 20972679 ~ 20976236 (-)
G1913665 NA other upstream 1599325 21863588 ~ 21864274 (-)
G1913663 NA other upstream 1606990 21871253 ~ 21872149 (-)
G1915836 NA other upstream 3487580 23751843 ~ 23752463 (-)

Expression


Co-expression Network