G1912469


Basic Information

Item Value
gene id G1912469
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 20968447 ~ 20970558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2187183
TTAGACTAATGCATTGAAATACCAATCTGTCATTACCACAGATTAGGTGAAGTTAATGCTAGAAAAATAAATTCAGTGCCACTCTGGCTGATAAGAGTTCAGCAGCTATGTTTTCTGCTACTCCAGAGGATGGTGACACTAATGAGCTGCCTACTCTGGATGAACTCCCATTTCCACCTGTAGATACGGATAATGGTAATCTAAACCCTTAACCTGTTTACATTATTTGGAACACTGAGCTGATGAGCAAGCACCAACctgttctaataaccaatttctcTGTTCATGCAAGTGGCTGACTGAACAAATCCTCGTgatcagtagctgcaatttggtAGTACGCCCAGACCTTGTCCTGAGAACGAAaaatatctcagtttcaaggtctcagcttataAGTAGCCTTTTGAGgtacatgttatgaaccagtattggtcggtcacattaATGAAAAAAAACAGTAATGATTCATTAATTATGCAAAATCATGCAAATATGACTTGTCTGTGTACAGTcgtatataagacaactgctgggactGCCCCAAGCAGAGCTCCCCGATTGACTTGTGTACTATAGTGTGTAATGGCGTCTTACATGGCTCTTTGACATAGGACAGTGTTGTTCTCTTTCATGATTTATTCTGTGAATACATACAACACTGTGTAAACTTCAGCACAACTGCTAAcccaccatgcaatctccatcaaAGTTTAACAACTCTTTGGCTGGCGGATCTGTAATAATTTCAGAAAAGTTAAATGTATATTTACACTATACATTTTGTACGTTATTACATTTATAACATGACTACAGAGGAGCTCTCAACTTATAATGACTCTGTCTGATGGCCTAACAAATCACCACAGCACATGGGCTACACGTGTAAAGTAACATATCATAATTCCAAGTCATTTGGGAGCACATACCTGTGAATACATACACAACACTGTGTAAACTTCAGCACAACTGCAAACCCACCATGCAATCTGAGTGACATgaaacataaaataaaaatacatttacagtTCGAGGTGACTAGCCTCATTAGCAAAGAAAGTACAAGGCAAATGTTAGTTAGCctttagcataacgcaacgtgcAAGTTTGATAAATGTCCATAAAATGTTAAATACATGACAGCTCTAACACTATCATGTGTCAACATCGATATCGATTATAAAACAATATGGTTTTCAGCCTAACATGCATTAGATATCATTTTTAAAGTGTGAATACTGAGTGCAGCATGGATCATGATACATACCTCCATCAAAGTTGAACAACTCTTTGGCTGGATGCTGTGTGATCATGCCTACTACATACATTTGTTTTCCCAGAGCTAAGAAACCACTGATCTGGTGGTTCTCCAgccacaccttgattgacctggctgtgtggcatggaacattgtcctgctggaaaaaacTATCCTCAGAATTGGtgaacattgtcagagcagaaggaagcaagttttcttccaggaTAACCTTGTACGTGGCTTGATTCAAGCGTCTttcacaaagacaaatctgcccgattccagccttgctgacgcacccccagatcatcaccgatcctccaccaaatttcacagtgggtgcgagacactgtggcttgtaggcctctccatgtctcgcacccactgtgaaatttggtggaaGATCGGTGATGATCTGTGGATGCTTCAgccagcccaatctccagacctgaacccgattgaaaacctctggaatgtgatcaagaggaagatggatggtcacaagccATTAAACAAAGCAGATCTGCTTGAATTTTTGTGCCAGGAGTGGCATAAAGTCagccaacatcaatgtgaaagactggtggagagcatgccaagacgcatgaaagctgtgattgaacatttctgaactcttcctaagTTAAAAGATTAGTATTCGGTTTATAAATGTATATTAacttattttctttgcattatttGAGATTATTTTCTGACAACACtgcatattttttgttattttaacCCGTTTtaattttctgcaaataaatgctcttaAATTACAAATATTTTTATTTCGGAGAAATGTTGTCAGAAGTTTATAGTATTAAACAAAATGTTTAgttttaccc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2187183 True 2112 lncRNA 0.39 1 20968447 20970558

Neighbor

gene id symbol gene type direction distance location
LOC110503987 LOC106613003 coding downstream 6806 20950918 ~ 20961641 (-)
LOC110503985 NA coding downstream 26943 20934474 ~ 20941504 (-)
LOC110503976 NA coding downstream 216273 20724908 ~ 20752174 (-)
LOC110503975 LOC106613012 coding downstream 243717 20697761 ~ 20724730 (-)
LOC110503972 LOC106613013 coding downstream 291817 20666881 ~ 20676630 (-)
LOC110503988 LOC106613001 coding upstream 59226 21029784 ~ 21064377 (-)
LOC110503989 LOC106613000 coding upstream 97088 21067646 ~ 21081164 (-)
LOC110503992 LOC106612997 coding upstream 118177 21088735 ~ 21111304 (-)
LOC110503990 LOC106612996 coding upstream 141513 21112071 ~ 21117277 (-)
LOC118944112 LOC106612996 coding upstream 146551 21117109 ~ 21126584 (-)
G1912454 NA non-coding downstream 18230 20948535 ~ 20950217 (-)
G1912439 NA non-coding downstream 21280 20945023 ~ 20947167 (-)
G1912462 NA non-coding downstream 42038 20926170 ~ 20926409 (-)
G1912385 NA non-coding downstream 133044 20812821 ~ 20835403 (-)
G1912483 NA non-coding upstream 36609 21007167 ~ 21007641 (-)
G1912496 NA non-coding upstream 95472 21066030 ~ 21066341 (-)
G1913254 NA non-coding upstream 115267 21085825 ~ 21086059 (-)
G1913296 NA non-coding upstream 201085 21171643 ~ 21175302 (-)
G1913393 NA non-coding upstream 374742 21345300 ~ 21345641 (-)
G1911862 NA other downstream 507010 20460668 ~ 20461437 (-)
G1910996 NA other downstream 1276934 19691066 ~ 19691513 (-)
G1910651 NA other downstream 1476839 19490717 ~ 19491608 (-)
G1910539 NA other downstream 1635222 19332841 ~ 19333225 (-)
G1910398 NA other downstream 1806289 19160449 ~ 19162158 (-)
G1912470 NA other upstream 2121 20972679 ~ 20976236 (-)
G1913665 NA other upstream 893030 21863588 ~ 21864274 (-)
G1913663 NA other upstream 900695 21871253 ~ 21872149 (-)
G1915836 NA other upstream 2781285 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 5192907 26163462 ~ 26165289 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) fam135a fam135a misc NC_047622.1 CM018568.1 9947741 ~ 10050101 (+)