G1912568 (LOC106612993)


Basic Information

Item Value
gene id G1912568
gene name LOC106612993
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21202930 ~ 21205447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2187322
CGGATGTTGGTTGGCGTaagaaaacaacaaaacacacGGGCGCAACATGGGGGACGTTTGTTGTCACCTGAGGGAGGATGGAGATTTTGAAGGACTGGCTGTTGTTGGTGGCTCTCAGGTAGATGGACAGTTTGGGGAAGAACCTCCACGGTGTCTCTCCCTTCAACCAGCAGGCCAGTTTAGTGCCACCCCAGAACCCTGAGGTGAAGTCCTGGATCAGAGATGTTCTTGAGATGGCCTCCACCACAGCATTGAACACATTCACAGGCAGCCGCAGAAGAGTGGTTCCACTGTCCACTATGGCTTTATCCTGGTTGTaCTCTTTGCAGTCCAGGTTTAGATTCTGGTCCCCAACCTCCAGCTTTAATACTTCCACCTGATAGTACCACTCTTCCTTTATAGGGGTGTACCACATGGACCCCGAATACAATGTTGGTTCAACCCCTCCCATGACAAGACTTCCCCCCGCGGGGTCGGCAGTGGTGCTGTCTGACAACCCAGCTCCGCACATCTGGAGGGAGAACACATCTGGGATGCCTGTCTGTCGTACCACAGAGTTAAAGAAGGGCTCCACCGAGGAGTCAGGCTGAGCCAGCAGGGGGTAGGCCAGGCCCAGGATGCCCTGCCAGTTGACCCCCGGGAGGAAGAATCCGTTGGAGGAGAGAATGGTGGCGATGTTGATGGTGGGGGTGCCGGGGATGCTGGGGATGCGGACGTGGTCGGTGCCCAGCTCGCCCTCCCAGTTGCCCTGGGTGTACTTGACGGCCACGCCCCTGCCAGTGGACTGGTAC

Function

NR:

description
beta-secretase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2187322 True 791 lncRNA 0.57 5 21202930 21205447

Neighbor

gene id symbol gene type direction distance location
LOC110503996 NA coding upstream 2053 21198192 ~ 21200877 (+)
atm atm coding upstream 8328 21151903 ~ 21194602 (+)
LOC118944065 NA coding upstream 69354 21130444 ~ 21133576 (+)
LOC110503464 NA coding upstream 72565 21128900 ~ 21130365 (+)
LOC118944113 NA coding upstream 85672 21111436 ~ 21117258 (+)
dscamb LOC106612992 coding downstream 24022 21229469 ~ 21356455 (+)
LOC110504000 LOC106612988 coding downstream 316157 21521604 ~ 21525948 (+)
LOC110504007 NA coding downstream 327249 21532696 ~ 21537673 (+)
LOC110504008 LOC106612987 coding downstream 337862 21543309 ~ 21557646 (+)
sacs LOC106612984 coding downstream 442924 21648371 ~ 21683308 (+)
G1912558 NA non-coding upstream 27626 21173632 ~ 21175304 (+)
G1912554 NA non-coding upstream 51256 21151131 ~ 21151674 (+)
LOC110503368 NA non-coding upstream 120548 21081201 ~ 21087692 (+)
G1912267 LOC106613001 non-coding upstream 159360 21043207 ~ 21043570 (+)
G1912266 NA non-coding upstream 160797 21041791 ~ 21042133 (+)
G1912630 NA non-coding downstream 95588 21301035 ~ 21301432 (+)
G1912631 NA non-coding downstream 96021 21301468 ~ 21301851 (+)
G1912651 NA non-coding downstream 130296 21335743 ~ 21336072 (+)
G1912674 NA non-coding downstream 186424 21391871 ~ 21392171 (+)
G1912713 NA non-coding downstream 241086 21446533 ~ 21446775 (+)
G1912565 LOC106612993 other upstream 481 21201136 ~ 21202449 (+)
G1911474 NA other upstream 895538 20304763 ~ 20307392 (+)
G1911460 LOC105030512 other upstream 916864 20284320 ~ 20286066 (+)
G1910697 NA other upstream 1583200 19619418 ~ 19619730 (+)
G1909739 wdr81 other upstream 2405652 18789221 ~ 18797278 (+)
G1913153 NA other downstream 988343 22193790 ~ 22194607 (+)
G1915361 LOC106611080 other downstream 2219742 23425189 ~ 23426072 (+)
G1916129 NA other downstream 2806818 24012265 ~ 24012808 (+)
G1916588 NA other downstream 3312913 24518360 ~ 24519017 (+)

Expression


Co-expression Network