G1913661


Basic Information

Item Value
gene id G1913661
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21878222 ~ 21879232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2188547
ATAGAtacaattgaagacgggatgatctgtgttcaatacaggaggaaaacaaactgtagctagctttctggtcacgcgcctctatctaacagtacacttcaagtgaccctcgttcaagattgccgtacttcttcattacacaaaggaaaaacctcaaccaatttctaaagactggtgacatccagtggacgcgataggaactgcattcccaatgaaatcccattgaaaagagagtgacctgaaaaaaaaaatctgaatggtttgtcctcagggttacttacgcctgctaaataagttctgctatactcacagacatgattcaaacagttttagaatcttcagtgttttctatccagatctactaataatatgcatatcttatcttctggggatgagtagcaggcagttgaatttgggtaTGCATTTCATCCGGGACATGAAAATGCTgacccctgtcaccaagaagttaacggGATTGGTGCGTGAAGGGATCACTAAGCAGTTAACATTGTTGCACTGGATTGGATACAAAGCATCTAAGATGAGAAAAACATGTCTACACTGTGGTTTTTCACTCTACTATCTCGGCCTTGAGCTTGTGTGACTATCAGCAGGGGCAGACAATTCTCAGCCTGAGAACTAAAGCAGTACATCTCCATTTACCCAGTACTTTTCCATCATTACGCATTGCAAGCATACAAAGGTTAtcacatatatacagtaattATGGCACTGGTgtgacagctctaacacagttcCACCTCTCACACCACCAAAACAACCTTATTGGGGATGTCagctaaagcggatctgattgaatagagccctaaaatACAGATAAAGCCAAATGTAATTGCACAAGTGTGATTGCTGGCGGAAATATATTACAGAGAGGGCAGAAGTTCCTGTTCTGTTAAACAACACTGGATTCGAATCACGTCTCTCAGCACTTTTTAATGTCACAAAACACTCTGACTCAGCAAGTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2188547 True 988 lncRNA 0.41 2 21878222 21879232

Neighbor

gene id symbol gene type direction distance location
LOC110504022 NA coding downstream 28685 21845225 ~ 21849537 (-)
polr2i rpb9 coding downstream 47899 21826850 ~ 21830323 (-)
pglyrp5 polr2i coding downstream 51913 21824919 ~ 21826309 (-)
foxg1c LOC106613045 coding downstream 55501 21819254 ~ 21822721 (-)
snrpd2 snrpd2 coding downstream 77757 21796966 ~ 21800465 (-)
LOC110504025 LOC106612974 coding upstream 6267 21885499 ~ 21896235 (-)
LOC110504027 LOC106612972 coding upstream 20389 21899621 ~ 21987496 (-)
LOC110504029 LOC106612970 coding upstream 202203 22081435 ~ 22173799 (-)
mxh LOC106612969 coding upstream 367346 22246578 ~ 22265501 (-)
LOC110503369 LOC106612967 coding upstream 583034 22462266 ~ 22676276 (-)
G1913624 NA non-coding downstream 83973 21793627 ~ 21794249 (-)
G1913567 NA non-coding downstream 171835 21705625 ~ 21706387 (-)
G1913566 NA non-coding downstream 172948 21705041 ~ 21705274 (-)
G1913564 LOC106612984 non-coding downstream 194918 21669061 ~ 21683304 (-)
G1913588 NA non-coding downstream 212943 21665040 ~ 21665279 (-)
G1913793 NA non-coding upstream 192608 22071840 ~ 22072322 (-)
G1913752 NA non-coding upstream 200063 22079295 ~ 22080052 (-)
G1913828 NA non-coding upstream 270047 22149279 ~ 22149684 (-)
G1913968 NA non-coding upstream 488563 22367795 ~ 22368000 (-)
G1913663 NA other downstream 6073 21871253 ~ 21872149 (-)
G1913665 NA other downstream 13948 21863588 ~ 21864274 (-)
G1912470 NA other downstream 901986 20972679 ~ 20976236 (-)
G1911862 NA other downstream 1416785 20460668 ~ 20461437 (-)
G1910996 NA other downstream 2186709 19691066 ~ 19691513 (-)
G1915836 NA other upstream 1872611 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 4284233 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4331184 26208892 ~ 26241410 (-)
LOC110504098 LOC106613118 other upstream 5031552 26910083 ~ 26935725 (-)
G1919707 NA other upstream 5450218 27329450 ~ 27331899 (-)

Expression


Co-expression Network