G1915179 (LOC106612965)


Basic Information

Item Value
gene id G1915179
gene name LOC106612965
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23091134 ~ 23097586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2190142
TTTGAATCTAGACTAATCTAGGGAACATCAACTCAAATCAGCAGAGACGAAGACATACTACGACAAGACATAAGAGCTGGAGTCTAGTGAGATGGACTGTGCATACTGCTGAACATACCTGGATCCATTGATGTGGTCATACTCTCTCTTGACGTTCACTCGGACTGGCTGGTTAATCCACTCTTGCTGAGGGGGTAATGGGTTGATTTTGTGGGGCTGGACGTAGTCCTGTGTACCAGATGCAGTCATGTCTGTCTTGGGTAGAGGGGCAGCAGCAGCGTAAGGAGGCTCAAACAAGGACTGGTCTTCACTCACCACTGACAGTGCCTCCTTAATAGTTCCGTCCATTTTGCGCAATTTTCAGCGAACCCCAACAATATTCCAAACATGACACGCTCCTGAATTAATTCCAGTCCCCGATATGtcgcagagagaaagagacagttaccGGATGGTTTTTTTCTCTACATTTGGGAAGTGAAGTCACCGCTTTGAGAAGGAAGCTATGTGTGTCACTGCAAGCCCTGCCTTCATTGCAGCTCCAAAAAGCAGGATACTTGTCCCAAAGAGATAAGCAGGGAAAACAATTGCGTGTTTCCTCCGCTGTTAATGTTTTTACTCTGAAATATTTACAGAATGGTTGCCAGCGTTGTGCACATGTtgttgtaggctacatttgtGTCATTTTTTATACAAACGTCACAGACACTGGCGAATGAGTTTGTTTCAACAATACCATCAATATACATGTATTATGTTAAATTCATTTGCCGATGAAAAAGTAACAATTTAAACTGGTATAGACTGTTATGTGATTCCATAATGTTGAATAATCTCCTCATTGCTTTTAATACAATGCGTCCATTTCCCCCCCTTGATTTTACTTTAGCCTAATTCATCCCCTGCTCTTTTAACATCTTATATTCGCGTTTCCACTGCGAGATGGAGATATAAAATAGAGTTTCACTTTCAAAGCAGACAGATGTTTTCCTCGAGAGTGCTGATGAAATTGACTGTAAATCAAACCAAGAGGAACAAGAACTTGAACTACCTGTGGCAAGGGTTGATGCTCTTTGTTATAGCTTTCCAAGCCTCAGTGACGTTTTCCTGAAACACCATTAATAACATCCAAGCACGCAGCGCCCCAGATCAAGGTCCGCTCTACACGTGTGCGTCTGCTATCCAACACAGTAGGGAATTATGATGGATTGTAGGCTTATATTTCCAAATATTGC
>TU2190141
ggaccaacacttcacatgatgtgtttatatttttgttcagtatagatcaaTTCAAATGGCTGCCAGAACTTACTTTCCCTGAGGTAATTGAGATGAGAGAGTAGGACTTCAGCGTTGTACATGGTGGTCAGTCGGAGGAAGTCGTCCTTGCTCATCTTACACAGTTCCTTGCCGTCTGTGTTCTGGAACATGGCCGTGTCCATCTCCAGCAGGCCGTACTCCTTGATGGCCCACTCTAGCCACTGGCGGACATGATCCTGAGACCACAGCGACGGATCTGCGGGGACGATGACTCTCCTCTCATTGGTGGTCATGTTGGGGGGCGGAGCGTTCTTCTCGTCCATGTAGCTTCCGTAACTCATCTGAGATGTGTCATTGCCCCCCACCAGCTTGTTGCATTTACCCCCCACACTGCAGTCCACTGGGGACTCCCTGCTGGATCCATTGATGTGGTCATACTCTCTCTTGACGTTCACTCGGACTGGCTGGTTAATCCACTCTTGCTGAGGGGGTAATGGGTTGATTTTGTGGGGCTGGACGTAGTCCTGTGTACCAGATGCAGTCATGTCTGTCTTGGGTAGAGGGGCAGCAGCAGCGTAAGGAGGCTCAAACAAGGACTGGTCTTCACTCACCACTGACAGTGCCTCCTGCAGGCCAGAGGAGGAACAGGTTAT

Function

NR:

description
Friend leukemia integration 1 transcription factor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2190142 False 1235 lncRNA 0.43 2 23091134 23096136
TU2190141 True 674 lncRNA 0.53 3 23095780 23097586

Neighbor

gene id symbol gene type direction distance location
LOC110504033 LOC106612966 coding downstream 42393 22999057 ~ 23048741 (-)
LOC110503369 LOC106612967 coding downstream 414858 22462266 ~ 22676276 (-)
mxh LOC106612969 coding downstream 825633 22246578 ~ 22265501 (-)
LOC110504029 LOC106612970 coding downstream 917335 22081435 ~ 22173799 (-)
LOC110504027 LOC106612972 coding downstream 1103638 21899621 ~ 21987496 (-)
LOC110504036 LOC106581096 coding upstream 42381 23139967 ~ 23144967 (-)
LOC110504038 LOC106612963 coding upstream 129211 23226797 ~ 23295189 (-)
LOC110503370 LOC106581078 coding upstream 184297 23281883 ~ 23300679 (-)
LOC110504040 LOC106612962 coding upstream 232533 23330119 ~ 23341771 (-)
LOC110504042 LOC106612961 coding upstream 254526 23352112 ~ 23358660 (-)
G1915166 NA non-coding downstream 16945 23073946 ~ 23074189 (-)
G1915162 NA non-coding downstream 24410 23066357 ~ 23066724 (-)
G1915136 NA non-coding downstream 33117 23010265 ~ 23058017 (-)
G1915141 NA non-coding downstream 62892 23025976 ~ 23028242 (-)
G1915142 NA non-coding downstream 66835 23022887 ~ 23024299 (-)
G1915199 NA non-coding upstream 27510 23125096 ~ 23129306 (-)
G1915200 NA non-coding upstream 28223 23125809 ~ 23130697 (-)
G1915207 NA non-coding upstream 104539 23202125 ~ 23202459 (-)
G1915254 NA non-coding upstream 122000 23219586 ~ 23219798 (-)
G1915279 NA non-coding upstream 198084 23295670 ~ 23295905 (-)
G1913663 NA other downstream 1218985 21871253 ~ 21872149 (-)
G1913665 NA other downstream 1226860 21863588 ~ 21864274 (-)
G1912470 NA other downstream 2114898 20972679 ~ 20976236 (-)
G1911862 NA other downstream 2629697 20460668 ~ 20461437 (-)
G1910996 NA other downstream 3399621 19691066 ~ 19691513 (-)
G1915836 NA other upstream 654257 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 3065879 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 3112830 26208892 ~ 26241410 (-)
LOC110504098 LOC106613118 other upstream 3813198 26910083 ~ 26935725 (-)
G1919707 NA other upstream 4231864 27329450 ~ 27331899 (-)

Expression


Co-expression Network