G1915868 (LOC106612955)


Basic Information

Item Value
gene id G1915868
gene name LOC106612955
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23814639 ~ 23816814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2190887
AGTACAAGGACTGTTTTATGTTTTGGTCACGGTCATGAGAAACTGATTCAATAACGGAGCAGCGAAAAACCCCTGGGTGACATTCATAAATGTGTTTATGCAATGATTTGTTCAGACCACATTTCATCCTCAGTTTCAACCTCAAAGAGCAGTTGAAACAGAACAGGCAATGTTGGCTTCTAGGTCTTAGACCATGTAAACATTACGGAGCAAGATAGCAGGAGAATGTGTCCACTTAATAAAACTAGACATCAGAtgaggctggtggaaggagctataggaggatgtgcGCATTGTAacagctggaatggaataaatggaacagagGCCAATGTGGTTTCcaatcttcacccggcacagccagaagaggactggccacccctcagagcctggttcctctctaggtttcttcctaggttcctgtctttctagggagtttttcctagccactgtgaatctacatctacattgcttgctgtttggggttttaggctgggtttctgcatagcactttgtgacatctgctgatcttaaaagggctttataaatacatttgattgaaaaatgtatttgataccgtttcatttattccattccagccattacaatgagcccgtcctcctatagcgccTCCCACCAGCTTCCTATGAGAGACATACTTAACTATATACCCTACATAAGACGTTTACCTTTCTTTCTGAAATAAGAGTGGTCCTTGCATAGTAATGTGCATACTTCAATGATCTGATGATTGTTATGGAATATAACAATATTTTTCCTAGTGGCTGAGGTCTGTTTCTATTTCCAGATCCTAAAAAACTAAATGGTTTTAATATAATATCCATCAATGCTATTGGTAGCTTGTTACTGTAGTTGAAAGACATGCTTTATGCATAGCAAGCATGACGTGATAGTACAGTGGATTACTATAAATACCTCAGGCCTTTGGAATAAAAGCAAAACACATTTTTGAATTGAAATTTAAACAAACTGTTCAAATAGTAATTATCATGATTGGCGGCAATAACAAAAAGTGTTCTTTGCATATAGTGATATAAGGCACAGTTTTAGCACTAATGTGTTAGCTAGATGTCCATATTGACGGCAACGATCCGAACACAATCATGAGATAACCCCTTCAACGTCACAGGTTAGCACCTCGTcatgtttctgttcctgtccgagCTGCCTGTGAAACTGGCCCTGCTTTTGAGCCCTCCAACAATGGATATTCTGGCCCAGGGTGATACTCTTGATGATTGGCAAGTGACTTAGCATGTTATTTGGCAATGACGTTACTCCAGAGTTTGACAGATTGAGCTCCTGTAGAGACACAAGTCCACTGAACACAGCTGGGCTCAGTGTTTTTAGCTTGGCGTTGTTGGAGAGGTCCAAGACCTGAAGGTTCTGTAGGCCTCTGAAACAGTTGGGCTGGATGTTAAAGAGCTCAGGAAGCCCACTGAGGGACAGGTAAACAAGGTCCTTGAGGTCCTCAAAAGCACCCTCCTCAATGCGGGAGATACTGTTCCCATCCAGGTTTAGGTCCCTCAGCAGGATGCCTTTTAGCTTGGGCACGGCCCTCAGCTGGTTGGCTGCTAGAGTCAGGCTCTGGACATGTAGCAAGGGGCTCCTAGAAGAACTCAAGGAGACCACTGTCAGCCGGTTGTGGGACAGATCCACGCTGATTGGCTCTCCGTGATCTTTAGTGATGAACATGTCCAGATCAAACTCTCGGAAGTGGTTGTGGCTGAGGTCCAGAGACTCCAGGTAGCGCAGCCTGGACAGGGCCTTAGGGCTGACCATGGAGATGAGGTTGTTGCTGAGGTCCAGGCTGACCAAGGTGGTATAGCCAGGCCCAGAGAGCATGGTGTCAGTCAGCAGGGACATAGAGTTGGAGGAGAGGTCCAGGTGGGCAGTGTCCAGGGGGATGGAGATGGGGTTGGTGCTAGGGCCCACTCCCCTGCAGTCCACCCTGGTCAGGCTGAAGCTGTCGAACAAGCCGAAGCTCTCCACCTCACAGTGGCAACCCGGGTGGCAGTTCTTCACTGCTCCAGCTTGGCCATGGACCGCCAGGAGCATCCACAGGCTAACACACAGGAGAAACGCC

Function

NR:

description
tsukushin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2190887 True 2107 lncRNA 0.46 2 23814639 23816814

Neighbor

gene id symbol gene type direction distance location
LOC110503376 LOC106613110 coding upstream 18641 23792880 ~ 23795998 (+)
LOC110503375 LOC106612943 coding upstream 48421 23752934 ~ 23766218 (+)
LOC118944115 NA coding upstream 312962 23487167 ~ 23501677 (+)
LOC110503371 LOC106581229 coding upstream 419045 23388846 ~ 23395594 (+)
LOC110504039 LOC100380712 coding upstream 484574 23314175 ~ 23330065 (+)
LOC110504048 NA coding downstream 38329 23855143 ~ 23888178 (+)
LOC118944003 NA coding downstream 119503 23936317 ~ 23952562 (+)
pipox pipox coding downstream 837160 24653974 ~ 24670701 (+)
LOC110503380 LOC106613089 coding downstream 1292286 25109100 ~ 25111398 (+)
LOC110504061 LOC106613084 coding downstream 1303924 25120738 ~ 25239451 (+)
G1915835 NA non-coding upstream 61980 23752326 ~ 23752659 (+)
G1915833 NA non-coding upstream 65416 23748926 ~ 23749223 (+)
G1915826 NA non-coding upstream 70027 23744402 ~ 23744612 (+)
G1915778 NA non-coding upstream 99244 23715164 ~ 23715395 (+)
G1915776 NA non-coding upstream 100174 23713939 ~ 23714465 (+)
G1915999 NA non-coding downstream 94667 23911481 ~ 23911684 (+)
G1916008 NA non-coding downstream 100874 23917688 ~ 23917908 (+)
G1916025 NA non-coding downstream 110486 23927300 ~ 23927701 (+)
G1916043 NA non-coding downstream 119938 23936752 ~ 23937101 (+)
G1916045 NA non-coding downstream 121654 23938468 ~ 23938701 (+)
G1915361 LOC106611080 other upstream 388567 23425189 ~ 23426072 (+)
G1913153 NA other upstream 1620032 22193790 ~ 22194607 (+)
sacs LOC106612984 other upstream 2152941 21648371 ~ 21683308 (+)
G1912565 LOC106612993 other upstream 2612190 21201136 ~ 21202449 (+)
G1911474 NA other upstream 3507247 20304763 ~ 20307392 (+)
G1916129 NA other downstream 195451 24012265 ~ 24012808 (+)
G1916588 NA other downstream 701546 24518360 ~ 24519017 (+)
G1916660 NA other downstream 824884 24641698 ~ 24642134 (+)
G1916811 NA other downstream 1108320 24925134 ~ 24927054 (+)
G1917109 NA other downstream 1569505 25386319 ~ 25387517 (+)

Expression


Co-expression Network