G1916587


Basic Information

Item Value
gene id G1916587
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 24516988 ~ 24518323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2191641
TGTCTCTTGTGAAGGCCAGacataagagagagaacaaaggctaaacctggtcttaacttccaatgctccatccccctgcccaaACCCCCTCCACTCCGCAAACCGCaaggatgcccggcatcagaacattcctggcattcccgtgattggcagatagcaggttgattggcatgtcggaccccgcgaacactgggtactgataagtacaacacaaccacctactagcctaacacataacacacagctgtctgtgcgggtgGCTACAGTACATAACAATAAatatgctatatacaggggagggGGCACAATCGATTTGAACAGAGGGGCAAAGTGGATGCCTTCAAAATTAAGTTTACCGTTTGGGCAATCATGTTTCTAACCGGGGGACTAACATGTTTCCCAATGCTGATTTCGAAATTCAGAATATAATCAACAAAGCGCACAGCGACACACTGAGAAAAAACGTTAAACAGCATCTTGTCAAACTGCTGGGAAAGTTTTGCGAGTCTTTCCCGGAGGAGAACAGGAGACAAGACGCCTGGATAAGCGACCCTTTCGAGTTGAGATGGGAAGCGTCACGTTGCCAAGCAACGAATAGGCTCTTTTCGTGGAGCTGTCGTTTGATCGCGGACTGAGCATGCGCTACCCGGAAATGACACTGTCAAAGTTCTGGAGCAGCGTAATGGGAGAGTATCCTGTCATGCATTCAGAATCATGCTACCCTTCAGCACTACCTATCTGTGTGAAAGTGGCTTCTCTGCTATGGCCATGCTGAAAACTAAAAGCAGAAACTAACTGGACAGCCCGCATGACCTCCGAGTTGCCCTATCAAACAGACTTCAATAAACTTATTTAACTGAAGAAACACCCCTGCTTTCTCACTgataggccacacacacacacacacacacacaataaatgaACAGGACTGGCATGTTTGGCTTTTGTTTAACATTATTGAACTTgtatgtgttactgttcattaacattattggactggtttTGATGTCATGTTCTGAGTCTGATCATTTATTACACCCCATTCCTGGACCGACCGCCTAATTAAATGGCTTATTCTCTTGAATTTATAATACATGTGTTCTCAGTTAATATGGTTGTGTAGCCTAATTACTTTCTTTAATACCATAATTGAGAACAGAGTCTATTTTGCAAATGAAACCTGCCCAATAAGGCAGCTgcaatacaacattataaaatgttATCATCAACAGTCCATAATAATGGGTCGCGACTCAATTGTTATTGTCAAATTTGGGTCCCCAGGCAAAACCAGTTAAGAACCGCTGTCAGATCAAAGTTTTGCCCAACACTTCGC

Function

NR:

description
PREDICTED: protein FAM200B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2191641 True 1336 lncRNA 0.44 1 24516988 24518323

Neighbor

gene id symbol gene type direction distance location
LOC118944003 NA coding upstream 564426 23936317 ~ 23952562 (+)
LOC110504048 NA coding upstream 628810 23855143 ~ 23888178 (+)
LOC110503376 LOC106613110 coding upstream 720990 23792880 ~ 23795998 (+)
LOC110503375 LOC106612943 coding upstream 750770 23752934 ~ 23766218 (+)
LOC118944115 NA coding upstream 1015311 23487167 ~ 23501677 (+)
pipox pipox coding downstream 135651 24653974 ~ 24670701 (+)
LOC110503380 LOC106613089 coding downstream 590777 25109100 ~ 25111398 (+)
LOC110504061 LOC106613084 coding downstream 602415 25120738 ~ 25239451 (+)
akap1b LOC106613083 coding downstream 726839 25245162 ~ 25259509 (+)
msi1a LOC106613081 coding downstream 750516 25268839 ~ 25603426 (+)
G1916582 NA non-coding upstream 20393 24495906 ~ 24496595 (+)
G1916581 NA non-coding upstream 25532 24490805 ~ 24491456 (+)
G1916580 LOC100194703 non-coding upstream 35157 24481164 ~ 24481831 (+)
G1916579 NA non-coding upstream 36850 24479516 ~ 24480138 (+)
G1916575 NA non-coding upstream 39137 24476199 ~ 24477851 (+)
G1916610 NA non-coding downstream 34871 24553194 ~ 24553582 (+)
G1916614 NA non-coding downstream 41296 24559619 ~ 24559887 (+)
G1916662 NA non-coding downstream 125014 24643337 ~ 24643625 (+)
G1916669 NA non-coding downstream 133303 24651626 ~ 24651941 (+)
G1916690 NA non-coding downstream 170500 24688823 ~ 24692954 (+)
G1916129 NA other upstream 504180 24012265 ~ 24012808 (+)
G1915361 LOC106611080 other upstream 1090916 23425189 ~ 23426072 (+)
G1913153 NA other upstream 2322381 22193790 ~ 22194607 (+)
sacs LOC106612984 other upstream 2855290 21648371 ~ 21683308 (+)
G1912565 LOC106612993 other upstream 3314539 21201136 ~ 21202449 (+)
G1916588 NA other downstream 37 24518360 ~ 24519017 (+)
G1916660 NA other downstream 123375 24641698 ~ 24642134 (+)
G1916811 NA other downstream 406811 24925134 ~ 24927054 (+)
G1917109 NA other downstream 867996 25386319 ~ 25387517 (+)
G1917119 NA other downstream 883922 25402245 ~ 25403061 (+)

Expression


Co-expression Network