G1928170


Basic Information

Item Value
gene id G1928170
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 36166626 ~ 36169329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2204953
GGACGCAGATGTTTGATCAGCTCAACAGTGATAATACTGTGCCGTGTCAGGATTAGGCCGATGTTGCTGTTGTCACTGTGCTAGTTTAGCAACTTCCTCCCTCAACTTGCCTCTGACTAGACTTAACGCcaatgtttcccaactccagttctcAATTACccccaacacaacacatttttattgtagcccaggacaagcacacctgacacctcttgtcaactaatcatcaagccctcaatgagctgAATGAGGTCTGTCCCCCCCAgggctacaacaacaacaacaacatgtacgGTTTTAAGTACAGGAGGACCGGCGTTGACTTATACCAAAGTCCTCTGCCTCACAAACACACCCAGCTGACCCCAGCTGACCCCACGCTTGACGATATGTACAAACCAGATGTGCCACTGGAAAGGATATGTTTCCATTTAAACAGTCCCACTCCATTAGCCACTACTCTTGTTGCTGGGTGAACTCTATGGGTTGGTGTGATAGGATGTCTGTCATCAGTTTAACTCCAATGGAGCTTTATTACAAATGTGCCGAGTGGAGTTTTTTCTttcctgaatatatatatataatatatatatacagcagtatgtggacaacccttcacattagtggattcggctatttcagccacacccgttgctgaaagATGTATACAATtcgagcacacggccatgcaatctccatagacaaacattggcagtagaatggcccttactgaagagctcagtgactttcaacgtggcatcatcaaaaggatgtcacctttccaacaagtcagtttagttaaatttctgccctgctaaagatGCCATGGCCGAGCACACAAGATCAACcacgcgcaatgccaagcgtcggctggagtggtttaaagctcaccgccattggactctggagcagtggaaacgtgttctctggagtgatgaatcacgtttcaccatctggcagtccgacggacgaatctgggtttggaggttGCGCggtagaacgctacctgcccataATGCATAGTGTCaagtgtaaagtttggtggatgaggaataatggtctgaggctgtttttcatgtttcggacccattagttccagtgaagggaaatcttgatacagcatacaatgacattctagactattctgtgcttccaattttgtggcaacagtttggggaaggccctttcctgtttcagcatgacacaaagcgaggtccgtacagaaatggattgtcaagatcggtgtggaagaacgtgACACCAACAACCACAtaccatcgaacacctttgggatgaattggaacgtcgactgtgagtcaggcctaatcgcccaacatcagtgcccgacctcactaatgctcctgtggccgaatggaagcaagtccctgcagtaaTGTTACAACAtttagtggaaaaccttcccagaagagtggaggctgttatagcagcaatgttccaacgtctagtggaaagccttcccagaagagtggaggctgttatagcagcaatgttccaacgtctagtggaaaaccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcaacaaaggggggACCGACTCCATGTTGATgtcaatgattttggaatgagatgttcgacgagcaggtgtccatactttgtcatgtactgtacatacacttgagtatacaaaacattaagaacacctgcactttccatgacacagactgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacctgttaaatcaacttcaaccagtgtagatgaaggggaggtgacAAGTTGAATGGGGCAAgagaaaatatttaagtgcctttgaacgggatatggtaaTATGTGACAGGCTCACCGGTTAGTGTCAAGAgttacaacactgctgggtttttcacacaacagtttcctgtgtgtgtcaagaatgggctaccacccaaaggacatccagacaatttgacacaactgtgggaagcattggagtcgtcATGGTGGCCAGCAACCCTGtgaaacgctttcaacaccttgtagagtccacccCCAAccaactgaggctgttctgagtgcaaacAGAGGGAGGGTATTAGGAAAGTGTTCATGTTTGGTTTACTCAATGTAATCGCTAGGCATCGAGGGTTTTTAAGGTGatttctgattgagccgacatatgcaacGTTCACCTGTGAATGGGATATCAGTAATTGCCGGAACATACCCATTAAATAGAGCCACAATGCCCATTAAATAGAGCCACATTTAGATTGAATCTCAGTGTATTTTTCATACAATCGAGTCAAGATGTCAGCAGCTAGGTAAGGATGTATGAGTGAGTCATAACATGTCCAAAAGAAAAATGTGGC
>TU2204967
agccacacccgttgctgaaagATGTATACAATtcgagcacacggccatgcaatctccatagacaaacattggcagtagaatggcccttactgaagagctcagtgactttcaacgtggcatcatcaaaaggatgtcacctttccaacaagtcagtttagttaaatttctgccctgctaaagatGCCATGGCCGAGCACACAAGATCAACcacgcgcaatgccaagcgtcggctggagtggtttaaagctcaccgccattggactctggagcagtggaaacgtgttctctggagtgatgaatcacgtttcaccatctggcagtccgacggacgaatctgggtttggaggttGCGCggtagaacgctacctgcccataATGCATAGTGTCaagtgtaaagtttggtggatgaggaataatggtctgaggctgtttttcatgtttcggacccattagttccagtgaagggaaatcttgatacagcatacaatgacattctagactattctgtgcttccaattttgtggcaacagtttggggaaggccctttcctgtttcagcatgacacaaagcgaggtccgtacagaaatggattgtcaagatcggtgtggaagaacgtgACACCAACAACCACAtaccatcgaacacctttgggatgaattggaacgtcgactgtgagtcaggcctaatcgcccaacatcagtgcccgacctcactaatgctcctgtggccgaatggaagcaagtccctgcagtaaTGTTACAACAtttagtggaaaaccttcccagaagagtggaggctgttatagcagcaatgttccaacgtctagtggaaagccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcaacaaaggggggACCGACTCCATGTTGATgtcaatgattttggaatgagatgttcgacgagcaggtgtccatactttgtcatgtactgtacatacacttgagtatacaaaacattaagaacacctgcactttccatgacacagactgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacctgttaaatcaacttcaaccagtgtagatgaaggggaggtgacAAGTTGAATGGGGCAAgagaaaatatttaagtgcctttgaacgggatatggtaaTATGTGACAGGCTCACCGGTTAGTGTCAAGAgttacaacactgctgggtttttcacacaacagtttcctgtgtgtgtcaagaatgggctaccacccaaaggacatccagacaatttgacacaactgtgggaagcattggagtcgtcATGGTGGCCAGCAACCCTGtgaaacgctttcaacaccttgtagagtccacccCCAAccaactgaggctgttctgagtgcaaacAGAGGGAGGGTATTAGGAAAGTGTTCATGTTTGGTTTACTCAATGTAATCGCTAGGCATCGAGGGTTTTTAAGGTGatttctgattgagccgacatatgcaacGTTCACCTGTGAATGGGATATCAGTAATTGCCGGAACATACCCATTAAATAGAGCCACAATGCCCATTAAATAGAGCCACATTTAGATTGAATCTCAGTGTATTTTTCATACAATCGAGTCAAGATGTCAGCAGCTAGGTAAGGATGTATGAGTGAGTCATAACATGTCCAAAAGAAAAATGTGGCGTGATTTTTTTTttccaataaaaaataaaacaagtttTGCAGT
>TU2204963
ttaaagctcaccgccattggactctggagcagtggaaacgtgttctctggagtgatgaatcacgtttcaccatctggcagtccgacggacgaatctgggtttggaggttGCGCggtagaacgctacctgcccataATGCATAGTGTCaagtgtaaagtttggtggatgaggaataatggtctgaggctgtttttcatgtttcggacccattagttccagtgaagggaaatcttgatacagcatacaatgacattctagactattctgtgcttccaattttgtggcaacagtttggggaaggccctttcctgtttcagcatgacacaaagcgaggtccgtacagaaatggattgtcaagatcggtgtggaagaacgtgACACCAACAACCACAtaccatcgaacacctttgggatgaattggaacgtcgactgtgagtcaggcctaatcgcccaacatcagtgcccgacctcactaatgctcctgtggccgaatggaagcaagtccctgcagtaaTGTTACAACAtttagtggaaaaccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcaacaaaggggggACCGACTCCATGTTGATgtcaatgattttggaatgagatgttcgacgagcaggtgtccatactttgtcatgtactgtacatacacttgagtatacaaaacattaagaacacctgcactttccatgacacagactgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacctgttaaatcaacttcaaccagtgtagatgaaggggaggtgacAAGTTGAATGGGGCAAgagaaaatatttaagtgcctttgaacgggatatggtaaTATGTGACAGGCTCACCGGTTAGTGTCAAGAgttacaacactgctgggtttttcacacaacagtttcctgtgtgtgtcaagaatgggctaccacccaaaggacatccagacaatttgacacaactgtgggaagcattggagtcgtcATGGTGGCCAGCAACCCTGtgaaacgctttcaacaccttgtagagtccacccCCAAccaactgaggctgttctgagtgcaaacAGAGGGAGGGTATTAGGAAAGTGTTCATGTTTGGTTTACTCAATGTAATCGCTAGGCATCGAGGGTTTTTAAGGTGatttctgattgagccgacatatgcaacGTTCACCTGTGAATGGGATATCAGTAATTGCCGGAACATACCCATTAAATAGAGCCACAATGCCCATTAAATAGAGCCACATTTAGATTGAATCTCAGTGTATTTTTCATACAATCGAGTCAAGATGTCAGCAGCTAGGTAAGGATGTATGAGTGAGTCATAACATGTCCAAAAGAAAAATGTGGC
>TU2204961
agcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcaacaaaggggggACCGACTCCATGTTGATgtcaatgattttggaatgagatgttcgacgagcaggtgtccatactttgtcatgtactgtacatacacttgagtatacaaaacattaagaacacctgcactttccatgacacagactgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacctgttaaatcaacttcaaccagtgtagatgaaggggaggtgacAAGTTGAATGGGGCAAgagaaaatatttaagtgcctttgaacgggatatggtaaTATGTGACAGGCTCACCGGTTAGTGTCAAGAgttacaacactgctgggtttttcacacaacagtttcctgtgtgtgtcaagaatgggctaccacccaaaggacatccagacaatttgacacaactgtgggaagcattggagtcgtcATGGTGGCCAGCAACCCTGtgaaacgctttcaacaccttgtagagtccacccCCAAccaactgaggctgttctgagtgcaaacAGAGGGAGGGTATTAGGAAAGTGTTCATGTTTGGTTTACTCAATGTAATCGCTAGGCATCGAGGGTTTTTAAGGTGatttctgattgagccgacatatgcaacGTTCACCTGTGAATGGGATATCAGTAATTGCCGGAACATACCCATTAAATAGAGCCACATTTAGATTGAATCTCAGTGTATTTTTCATACAATCGAGTCAAGATGTCAGCAGCTAGGTAAGGATGTATGAGTGAGTCATAACATGTCCAAAAGAAAAATGTGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2204953 False 2538 TUCP 0.46 2 36166626 36169286
TU2204967 False 1884 TUCP 0.45 2 36167389 36169329
TU2204963 False 1544 lncRNA 0.45 2 36167629 36169286
TU2204961 True 845 lncRNA 0.44 2 36168420 36169286

Neighbor

gene id symbol gene type direction distance location
wdr53 wdr53 coding upstream 1165 36163343 ~ 36166464 (+)
LOC110503249 LOC106613309 coding upstream 17107 36145024 ~ 36150522 (+)
LOC110503428 LOC106581496 coding upstream 41409 36124822 ~ 36126220 (+)
LOC110503248 LOC106613310 coding upstream 47265 36114887 ~ 36120364 (+)
LOC110503247 LOC106613308 coding upstream 101975 36041556 ~ 36065654 (+)
LOC110503252 LOC106581503 coding downstream 11273 36180559 ~ 36218330 (+)
LOC110503435 LOC106581515 coding downstream 86606 36255892 ~ 36413741 (+)
LOC110517470 sh2b2 coding downstream 265672 36434958 ~ 36498284 (+)
bud23 wbscr22 coding downstream 336602 36505888 ~ 36512484 (+)
LOC110503243 LOC106613311 coding downstream 372177 36541463 ~ 36560736 (+)
G1928179 NA non-coding upstream 6546 36159662 ~ 36161083 (+)
G1928177 NA non-coding upstream 12231 36151931 ~ 36155398 (+)
G1928176 NA non-coding upstream 19417 36146680 ~ 36148212 (+)
G1928142 NA non-coding upstream 64943 36102483 ~ 36102686 (+)
G1928196 NA non-coding downstream 40692 36209978 ~ 36211963 (+)
G1928239 NA non-coding downstream 52902 36222188 ~ 36222543 (+)
G1928258 NA non-coding downstream 72618 36241904 ~ 36242233 (+)
G1928263 NA non-coding downstream 79701 36248987 ~ 36252176 (+)
G1928308 NA non-coding downstream 153786 36323072 ~ 36323454 (+)
G1927540 NA other upstream 785760 35379902 ~ 35381869 (+)
LOC110503217 LOC106613270 other upstream 1530506 34501674 ~ 34638201 (+)
G1926351 NA other upstream 2085894 34079223 ~ 34082461 (+)
G1925870 NA other upstream 2419376 33742659 ~ 33748253 (+)
G1925778 NA other upstream 2625697 33541189 ~ 33541932 (+)
G1928430 NA other downstream 492588 36661874 ~ 36662497 (+)
LOC110503264 LOC106581527 other downstream 888720 36985873 ~ 37079320 (+)
urb1 urb1 other downstream 1004320 37125695 ~ 37191160 (+)
LOC110503265 scaf4 other downstream 1032573 37193636 ~ 37239498 (+)
LOC110503436 tiam1 other downstream 1122376 37291589 ~ 37375534 (+)

Expression


Co-expression Network