G1928461


Basic Information

Item Value
gene id G1928461
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 36757257 ~ 37151803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2205369
CagacaatgtttttccactcctcaattgtccagtgatGGTGTTGGTGATGGCCACTGGAgcctcttcttcttgtttttatctGAAAGGAACCCAGTGagcaccactgttgtactgtgtAGGTATTTGTGACCCAccttcgacctctctcatcaacgagctggtttctacccacaggactgccgctgactggatgtttgtttgtttgtcccaCTGTTCTCTGTAAACCATAGACACTGACactgcgtgaaaagcccaggaggacgtttctgagatactggaacctgGCACCGACAATACCACGCTCAAATTCGCTTAGGTCACTCATTTAGCCCGCTTTaacattcaatcaaacagtaactgaatgtctcgatgcctgtctgcctgctttatataggaagccacggccacgtgactccctgtacctaataaactgtcatACTGAGTGTATAATGTGCTGTACTGTCTCTGGCTACTAACTTGCTTGGTCATTGACACTAACGTTGTGTCACTCTAAAACAAAGTTAGACTTGAAGCATCACACAGTATATAATTTAACCCCTAGTCCAATTCAACACAGAGGAATCTCAATCTCATTATTTGGTATCAAATACTTGGGTCTCTGTGATGGAGAGGTCAGGGGGTCTCTGTGACGGAGAGGTCAGGGGGTCTCTGTGACGGAGAGGTCAGGGGGTCTCTGTGACGGAGAGGTCAGGGGGTCTTTGGTCTCTGTGATGGAGAAGGGTACtgatcatttttaaaaattaatttAACCtcgagtgtagggggcagtattttgatgtttggatgaaaaacatacccaaattaaactgcctatttctcaggcccagaatatgcatataattgtcagattaggatagaaaacactctaaagtttccaaaactgtcaaaatattgtctgtgagtataacacaactgatattgcaggcgaaaacctgaggaaaatccaacccggaagtggcttctattttgaaagctacatgctccatagcctgccttcgctccatttaaagggatatcaaccaggtTCCTTTTCCTATTGCTTCCCCATGGtatgaacagtctttagacatagtttcaggcttttattttgaaaaattagcgagaaagatcacattgagtcattgtatggctgggtgccagcagtgtTTTTTATgagcaacagcttggagcagccattttctctctctctcctattgaagaagctacagtcccggttgatatattatcaatttatattgtaaaaacaacctgaggattgattaaaaAACGTTTGAAATTTTTCTACGAAGagtacggatactatttggaattttcgtctgcgatgtcgtgaccgctcgagcctgtggatttctgaacataacgtgccaaacaaatggaggtattttggatataaaaataatctttacggaacaaaaggaacatttattgtgtaactgggagtctcgtgagtgcaaacatctgaagatcatcaaaggtaagcgatttaatttactgcttttctgactttcgtgaccaatctacttggctgctagctgtttgtaatgttttgtctactgagagagatatccttacataaacgcttgttgtgctttcgccgaaaagcttgattgaaatctgacatgccaggtggattaacaacaagctaagctgtgctatattgcacttgtgatttcatgattattattatttttttgtaatttaatttgaatttggcgctctgcaattcagcggtggTTGACggaaatgatcccgctaacgggatgggtgcatcaagaactttatttaaataggcaagtcagttaagaacaaattatttacaatgacagcctcccagggaacagtgggttaaactgccttgttcaggggcagaacaacagatttttaccttggcagatcggggattcgatctagcagccTTTCAGTTAGTGgcctaatgctctaaccactaggctacctgcctctaaccactaagctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaagctacctgcctctaaccactaagctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaagctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgccgcccctctaaccactaagctacctgcctctaaccactaggctacctgcctctaaccactaggc
>TU2205370
CagacaatgtttttccactcctcaattgtccagtgatGGTGTTGGTGATGGCCACTGGAgcctcttcttcttgtttttatctGAAAGGAACCCAGTGagcaccactgttgtactgtgtAGGTATTTGTGACCCAccttcgacctctctcatcaacgagctggtttctacccacaggactgccgctgactggatgtttgtttgtttgtcccaCTGTTCTCTGTAAACCATAGACACTGACactgcgtgaaaagcccaggaggacgtttctgagatactggaacctgGCACCGACAATACCACGCTCAAATTCGCTTAGGTCACTCATTTAGCCCGTTTTaacattcaatcaaacagtaactgaatgtcttgatgcctgtctgcctgctttatataggaAGCCACggtcacgtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2205369 False 2462 lncRNA 0.44 2 36757257 36759812
TU2205370 True 412 lncRNA 0.47 2 36757257 37151803

Neighbor

gene id symbol gene type direction distance location
LOC110503266 LOC106613355 coding upstream 7628 36673822 ~ 36749629 (+)
LOC110503243 LOC106613311 coding upstream 196521 36541463 ~ 36560736 (+)
bud23 wbscr22 coding upstream 244773 36505888 ~ 36512484 (+)
LOC110517470 sh2b2 coding upstream 258973 36434958 ~ 36498284 (+)
LOC110503435 LOC106581515 coding upstream 343516 36255892 ~ 36413741 (+)
LOC110503265 scaf4 coding downstream 41833 37193636 ~ 37239498 (+)
LOC118944105 NA coding downstream 92674 37244477 ~ 37291414 (+)
LOC110503436 tiam1 coding downstream 139786 37291589 ~ 37375534 (+)
LOC118944100 NA coding downstream 223788 37375591 ~ 37377209 (+)
LOC118944094 NA coding downstream 225934 37377737 ~ 37380221 (+)
G1928436 NA non-coding upstream 4591 36752057 ~ 36752666 (+)
G1928458 NA non-coding upstream 14873 36741820 ~ 36742384 (+)
G1928456 NA non-coding upstream 30114 36726314 ~ 36727143 (+)
G1928446 NA non-coding upstream 62370 36694628 ~ 36694887 (+)
G1928434 NA non-coding upstream 84359 36672668 ~ 36672898 (+)
G1928633 NA non-coding downstream 1157 37152960 ~ 37153239 (+)
G1928637 NA non-coding downstream 22852 37174655 ~ 37175182 (+)
G1928644 NA non-coding downstream 35012 37186815 ~ 37187027 (+)
G1928645 NA non-coding downstream 36748 37188551 ~ 37189282 (+)
G1928430 NA other upstream 94760 36661874 ~ 36662497 (+)
G1928169 NA other upstream 586786 36141229 ~ 36170471 (+)
G1928170 NA other upstream 587928 36166626 ~ 36169329 (+)
G1927540 NA other upstream 1375388 35379902 ~ 35381869 (+)
LOC110503217 LOC106613270 other upstream 2120134 34501674 ~ 34638201 (+)
urb1 urb1 other downstream 21803 37125695 ~ 37191160 (+)
G1928752 NA other downstream 283100 37434903 ~ 37435441 (+)
G1928756 NA other downstream 294064 37445561 ~ 37464638 (+)

Expression


Co-expression Network