G1928780


Basic Information

Item Value
gene id G1928780
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37535183 ~ 37537378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2205762
acttgctttggcaatgttaacacatgtttcccatgccaataaagcctttgaattgaattgaaattgaattgaattgaattgagagagagacaggtgtatTGCTCTCATCAACACCTCAATATGATTTTATTACTAAATGCTAAATGTTGTCCAGCTGTATTACTGATTGTGGGCAAAAGCCAAGCCAATATCCCCGTGAGGAATGGTAAAGATGTTAAGTTCCATCTGTTCTCAATAACAGACCAGCAACAGCTGGTTATTCCCTTTAGAACCCTCAAGATAACCCCGTTCCCTTTAGAACCCTCAAGATAATCCTGTTCCCTTTAGAACCCTCCAGATAACCCCATTCCCTTTAGAACCCTCAAGATAACCCTTTAGAACCCTCAAGATAACCCCATTCCCTTCAGAACCCTCAAGATAACCCTGTTCCCTTCAGAACCCTCAAGATAACCCCGTTCCCTTTAGAAACCTCAAGATAACCCTGTTCCCTTTAGAACCCTCCAGATAACCCCGTTCCCTTTAGAACCCTCAAGATAACCCTTTAGAACCCTCCAGATAACCCCGTTCCCTTCAGAAACCTCCAGATAACCCCGTTCCCTTCAGAAACCTCCAGATAACCCCgttccatttagaaccctcaAGATAACCCTTTAGAACCCTCCAGATAACCCCATTCCCTTCAGAACCCTCCAGATAACCCCGTTCCCTTCAGAACCCTCCAGATAACCCCgttccatttagaaccctcaAGATAACCCTTAAGATAACCCTTTAGAACCCTCCAGATAACCCCGTTCCCTTCAGAACCCTCCAGATAACCCTGTTCCCTTCAGAACCCTACAGATAACTCTGTTCCCTTCAGCCCTGTACATGTGTCATGTAGCTTAGATTAAAACCTTTCATCATATTATCACAGTTGTCATGATAGTTTTTCCATCATGTATCAGCTATTAGACCAGCAGACCAGTTGTGACAGTCTGATATGGTAGTGTTTTCTGTAAGCCAGTCTAGAGCATGAAGCTTTACCTCCAATCGTTTGAAGCAGAGGATATGAATCCTTATCCCTGAATAACTAGTGTATTCATTTCTCGTCAAGCATAACCCATGCTTTTCCTTCCCCAGTACGAATGGCTAGACACCACATACATTTTTCAACTACTAAgttaaaaaaaagttgttttgACAGAACAAATGCTTGTTTACAAAAGAAAGGCAAAGCAACACTATGGAGTTATGTTGGCACCGTTATGACCCTTTACAATCATGGACAGACATTATATTTATGATTTTCTGCCAGGTCCCTTTTAGCAAAGTTATAAACCCGAAGAAAAACAGCAGACCGTGTCAGATCTGTCGACTCATCCTTTCATTTCGCTGCTCTATCGCTAGCGCCATACATCCGTCTGAACCTGCCGTCCTAGAAGTCGTCAAAACTACGTCATTCATGAATCGTGTAGGCCAGTTCTGGTCCAACCCATCGGggttctgggaccaatcagaacggttTGAATGTGTTCGCTTTCAGGAAGTCTTCGGGGGAGTAAACTAATTCAGACTCATGATGGAGAAGAAAACGTTAGTGGGCGTGGCGTTTAACTTGAGTGATGTTTGATCGGTAGCCAGGCAACCGTGGGATATCGCCCCCGTTACGTTCTGTCAGACTGGTAGCAGGAGTGAGACAAACATCCTATGTGTTCCGTGTTCTCTCAGCCATGTTAAACATCCAACGTGTTCTGTGTTCTCTCAGCCATGTTAATCATCCAACGTGTTCCGTGTTCTCTCAGCCATGTTAAACATCCAACGTGTTCTGTGTTCTCTCAGCCATGTTAATCATCCAACGTGTTCCGTGTTCTCTCAGCCATGTTAAACATCCAACGTGTTCCGTGTTCTCTCAGCCATGTTAATCATCCAACGTGTTCCGTGTTCTCTCAGCCATGTTAATCATCCAACGTGTTCCGTGTTCTCTCAGCCATGTTAAACATCCAACGTGTTCCGTGTTCTCTCAGCCATGTTAAACATCCAACGTGTTCCGTGTTCTCTCAGCCATGTTAAACATCCAACGTGTTCTCTCAGCCAATGATCAGATGaccttctaaacctaaccccaaactGATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2205762 True 2116 lncRNA 0.44 2 37535183 37537378

Neighbor

gene id symbol gene type direction distance location
or112-1 LOC106613329 coding upstream 92537 37440826 ~ 37442646 (+)
LOC110503430 LOC106613330 coding upstream 103066 37431071 ~ 37432117 (+)
LOC110503254 LOC106613331 coding upstream 121510 37410129 ~ 37413673 (+)
LOC118944094 NA coding upstream 154962 37377737 ~ 37380221 (+)
LOC118944100 NA coding upstream 157974 37375591 ~ 37377209 (+)
LOC110511319 LOC106613336 coding downstream 409285 37946663 ~ 37973546 (+)
LOC118944107 NA coding downstream 439267 37976645 ~ 37979130 (+)
LOC110511668 LOC106591056 coding downstream 502485 38039863 ~ 38121778 (+)
rasgrp4 rasgrp4 coding downstream 926057 38463435 ~ 38523166 (+)
LOC110503272 NA coding downstream 989506 38526884 ~ 38527767 (+)
G1928756 NA non-coding upstream 75466 37445561 ~ 37464638 (+)
G1928753 NA non-coding upstream 97222 37437726 ~ 37437961 (+)
G1928751 NA non-coding upstream 101789 37432916 ~ 37433394 (+)
G1928746 NA non-coding upstream 108825 37425846 ~ 37426358 (+)
G1928745 NA non-coding upstream 109531 37425298 ~ 37425652 (+)
G1928801 NA non-coding downstream 19425 37556803 ~ 37557291 (+)
G1928802 NA non-coding downstream 20254 37557632 ~ 37557962 (+)
G1928803 NA non-coding downstream 20887 37558265 ~ 37559059 (+)
G1928808 NA non-coding downstream 30100 37567478 ~ 37567910 (+)
G1928813 NA non-coding downstream 42647 37580025 ~ 37581372 (+)
G1928752 NA other upstream 99742 37434903 ~ 37435441 (+)
LOC110503436 tiam1 other upstream 242767 37291589 ~ 37375534 (+)
LOC110503265 scaf4 other upstream 331997 37193636 ~ 37239498 (+)
urb1 urb1 other upstream 351661 37125695 ~ 37191160 (+)
G1928851 NA other downstream 95837 37633215 ~ 37634159 (+)
G1929037 NA other downstream 660520 38197898 ~ 38198524 (+)
G1929196 NA other downstream 972468 38509846 ~ 38513105 (+)
ppp1r13l ppp1r13l other downstream 1052803 38590146 ~ 38653011 (+)

Expression


Co-expression Network