G1928876


Basic Information

Item Value
gene id G1928876
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37664533 ~ 37665919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2205884
TGTCAATACtttaacaaacaaacaacaagCTGACGGAGCAAATTTTTCAACATCAAACTGACATTCTGAAAGAAAATTACATTTACAGCAGGGGATAAAATTATAAGATTAAACAAAACAGAATACCAATTTTAGTACATTTCCACTGTCCCAGCAAAACTAACTCCAGTGATGCCACTTCACCTACAGGCTGACTAATGTCTCTCCAAAATGTAATAACTGACAAACACTAGTAAAATAATTActcaataaggcctgagggggtgtggtatatggtcaatgtaccacagctaagggctgttctttagcatgacgcaacgcggagtgcctggacacagcccttagccgtggtatattgaccatataccacaaacccccccaaagtgccttattgctattataaactggttaccaacgtaattagagcagtaaaactgATTTGTCAtaccgtggtatacagtctgttATGCCAATCAGCACTCAAACCACACAGTTTTCTAATAAGTGTTAAggtctgagggggtgtggtatatggccaatataccacggctaagggctgttcttacgcacaacgcaacacagagtgcctggacacagcccatagccgtggtatacagtctgatataccacagctttcagggctggaaccacccagtttataatatgacCTAAGACactaataaataataaaacagaCAAGTTCATGCAAACAGATCAGTCTCCATCTTCTGATATTCCAAGAATAGACAATAAAGTTTCTGATTTTCACATCACATAAAGTGCAGGGTTCATATCAGCTAGATTCCTCATCACTTTAGCAAGGTAACAACTACCTATCTCGCCTGTCTGTTCTGGACCCTGACCCCGTCCCGTGTCTGTCTGTTCTGGACCCTGACCCCGTCCCGTGTCTGTCTGTTCTGGACCCTGACCCCGTCCCGTGTCTGTCTGTTCTGGACCCTGACCCGTGTGTCCTGGAACCCATCCCGTATATATGTTCTGGACCCTGACCCCGTcccgtgtctgtttgtctgtcctgGACCCTGACCCCGTGTCTGTCTGTTCTGGACCATGACCCCATCCCGTGTCTGTCTGTTCTGGACCCTAACCCcgtcctgtgtctgtctgttctggACCCTAACCCCGTCCTGTATATGTTCTGGTACCTGACCCCGTCTCTGTTCTGGACCCTAACCTTTATCGGTCTTTATACTAGACAAGGCATAGAGGTACGCTGTTTAACCCGATCCGTCATAGAGGTATGCTGTGTTGTCCTGTTCATAGATGATAGCCACGGTCTCTCCTGCCTCCGATACAGCAGCACTGGTCTGGATACACA
>TU2205885
TGTCAATACtttaacaaacaaacaacaagCTGACGGAGCAAATTTTTCAACATCAAACTGACATTCTGAAAGAAAATTACATTTACAGCAGGGGATAAAATTATAAGATTAAACAAAACAGAATACCAATTTTAGTACATTTCCACTGTCCCAGCAAAACTAACTCCAGTGATGCCACTTCACCTACAGGCTGACTAATGTCTCTCCAAAATGTAATAACTGACAAACACTAGTAAAATAATTActcaataaggcctgagggggtgtggtatatggtcaatgtaccacagctaagggctgttctttagcatgacgcaacgcggagtgcctggacacagcccttagccgtggtatattgaccatataccacaaacccccccaaagtgccttattgctattataaactggttaccaacgtaattagagcagtaaaactgATTTGTCAtaccgtggtatacagtctgttATGCCAATCAGCACTCAAACCACACAGTTTTCTAATAAGTGTTAAggtctgagggggtgtggtatatggccaatataccacggctaagggctgttcttacgcacaacgcaacacagagtgcctggacacagcccatagccgtggtatacagtctgatataccacagctttcagggctggaaccacccagtttataatatgacCTAAGACactaataaataataaaacagaCAAGTTCATGCAAACAGATCAGTCTCCATCTTCTGATATTCCAAGAATAGACAATAAAGTTTCTGATTTTCACATCACATAAAGTGCAGGGTTCATATCAGCTAGATTCCTCATCACTTTAGCAAGGTAACAACTACCTATCTCGCCTGTCTGTTCTGGACCCTGACCCCGTCCCGTGTCTGTCTGTTCTGGACCCTGACCCCGTCCCGTGTCTGTCTGTTCTGGACCCTGACCCCGTCCCGTGTCTGTCTGTTCTGGACCCTGACCCGTGTGTCCTGGAACCCATCCCGTATATATGTTCTGGACCCTGACCCCGTcccgtgtctgtttgtctgtcctgGACCCTGACCCCGTGTCTGTCTGTTCTGGACCATGACCCCATCCCGTGTCTGTCTGTTCTGGTACCTGACCCGTCTCTGTTCTGGACCCTAACCCcgtcctgtgtctgtctgttctggACCCTAACCCCGTCCTGTATATGTTCTGGTACCTGACCCCGTCTCTGTTCTGGACCCTAACCTTTATCGGTCTTTATACTAGACAAGGCATAGAGGTACGCTGTTTAACCCGATCCGTCATAGAGGTATGCTGTGTTGTCCTGTTCATAGATGATAGCCACGGTCTCTCCTGCCTCCGATACAGCAGCACTGGTCTGGATACACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2205884 False 1336 lncRNA 0.46 3 37664533 37665919
TU2205885 True 1359 lncRNA 0.46 2 37664533 37665919

Neighbor

gene id symbol gene type direction distance location
or112-1 LOC106613329 coding upstream 221887 37440826 ~ 37442646 (+)
LOC110503430 LOC106613330 coding upstream 232416 37431071 ~ 37432117 (+)
LOC110503254 LOC106613331 coding upstream 250860 37410129 ~ 37413673 (+)
LOC118944094 NA coding upstream 284312 37377737 ~ 37380221 (+)
LOC118944100 NA coding upstream 287324 37375591 ~ 37377209 (+)
LOC110511319 LOC106613336 coding downstream 280744 37946663 ~ 37973546 (+)
LOC118944107 NA coding downstream 310726 37976645 ~ 37979130 (+)
LOC110511668 LOC106591056 coding downstream 373944 38039863 ~ 38121778 (+)
rasgrp4 rasgrp4 coding downstream 797516 38463435 ~ 38523166 (+)
LOC110503272 NA coding downstream 860965 38526884 ~ 38527767 (+)
G1928848 NA non-coding upstream 33892 37629517 ~ 37630641 (+)
G1928836 NA non-coding upstream 49871 37613674 ~ 37614662 (+)
G1928829 LOC106613339 non-coding upstream 62973 37599905 ~ 37601560 (+)
G1928813 NA non-coding upstream 83161 37580025 ~ 37581372 (+)
G1928808 NA non-coding upstream 96623 37567478 ~ 37567910 (+)
G1928889 NA non-coding downstream 37361 37703280 ~ 37704064 (+)
G1928905 NA non-coding downstream 150621 37816540 ~ 37816844 (+)
G1928914 NA non-coding downstream 179596 37845515 ~ 37845946 (+)
G1928915 NA non-coding downstream 205023 37870942 ~ 37877986 (+)
G1928851 NA other upstream 30374 37633215 ~ 37634159 (+)
G1928756 NA other upstream 199895 37445561 ~ 37464638 (+)
G1928752 NA other upstream 229092 37434903 ~ 37435441 (+)
LOC110503436 tiam1 other upstream 372117 37291589 ~ 37375534 (+)
LOC110503265 scaf4 other upstream 461347 37193636 ~ 37239498 (+)
G1929037 NA other downstream 531979 38197898 ~ 38198524 (+)
G1929196 NA other downstream 843927 38509846 ~ 38513105 (+)
ppp1r13l ppp1r13l other downstream 924262 38590146 ~ 38653011 (+)
bicra LOC106613370 other downstream 1265920 38845482 ~ 38932575 (+)

Expression


Co-expression Network