G1928915


Basic Information

Item Value
gene id G1928915
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37870942 ~ 37877986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2205929
ACACGCATGTCATAAGGCAGGGCGTACCAATCCTACTAATACTGCCACAGTTACTCCTCCCTCTGACAGCACAGAGCATGTGATGCACACACaacgctacacacacacgcacacaacgctacacacacacacagcgctacacacgcacgcacacgcacgcacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacaatgttataACAAGCCGGACAGAATGATGAACAACCTACGACAGGGGAACAGAAACAAACTGACAGCACACAGAATAACAGAATAACATAGTAGCAGTAATAAAGCTAAATAAACAGGTGAAAGTGATGGACGGTAAAGACGAAACATTAAGGACCATGGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGAAGGCCATCGACCAATCAACAGTCTCTTTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAACAAACAGTTTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCAACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAAAAAACAGACTCTCTGGAGGCCATTGACCAATAAACAGTCTCTCCTTAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGTAGGCCATCGACCAATAAACAGTCTGTCTGGAGGCCATCGACCCGTAACAGTCTCTCTAGCCAGGGAGGCTCGCTGTCGTAACACTTCTCAAGCCTCTTCTGGGAAACACCTGGTCCAGCCCAATGATTCACCCACATAAACAAGGTCCTTAGGCTTTTGTGCAAACGTGTGGTGTCCTCGTACTAATGTCTGGCACAAGTGAGTTCTGGACAGGCACTGTTGGTTCTAAAAAAAAAAGTCCTGGGCCCCATCCTTACTAGAAAATAAATGTGTTCCCCTTAAAATGAAGGATTTCATTCTGATCCTGTTGGTGTTCTCTGGGTCCAATGATGTCCTCCTGTACCTCTTCTGGGGTATCGGATAACCCTTAACCCCTGTCCTCAAAGTCTCTCCCATCACTACCCCACATGCCACTGCACCTCTAAGCCCctacagtaatacactatacagcTCTGCTACATGTAACACAATAAATTAATTCACTCCTTGAGataaatgtattatttaaatGTAAAGCCTATATTCATCCAGGTTATAGCgtgtaaaatgtttttaaaaaaaagcagAAATGTCCATAGTTCTGGTCTTGTTCCATCAGGGAGGAGGCTGGTTCTGTCATCGATCACAAATGATCATCTTCTCATCTCTTGTTCCACTCCTCCATCCCAGAGTCAATTCTTCTATCTCGTCTCTTGTTCCTCTCTgagttctctctcctccctccattccttctccGTGTGTCCATATCGGTGTGTGTGAGGAAAAAGAAGAGGCAGAGATAGAGGAGataggaggagatagaggagataggaggagataggagatagaggagatagggggagataggagatagaggagatgggggagattagaggagattagaggagattagaggagatgagaggagatacgggagatagaggagataggaggagataggagatagaggagatgggggagataataggagattagaggagattagaggagataATAGGAGATAAGAGGAGATACGGGAGATAGAGGAGATAGGAGGAGATATGACCGATGTCTTCTAGCTGCACTTACAGCTCTCCACAATCATGTTGGACAACTGTTCCACctgaaacaaacaaacacaccacaccactgttagtgactacacacccccaccactgttagtgactacacccaAACACCA
>TU2205930
ACACGCATGTCATAAGGCAGGGCGTACCAATCCTACTAATACTGCCACAGTTACTCCTCCCTCTGACAGCACAGAGCATGTGATGCACACACaacgctacacacacacgcacacaacgctacacacacacacagcgctacacacgcacgcacacgcacgcacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacaatgttataACAAGCCGGACAGAATGATGAACAACCTACGACAGGGGAACAGAAACAAACTGACAGCACACAGAATAACAGAATAACATAGTAGCAGTAATAAAGCTAAATAAACAGGTGAAAGTGATGGACGGTAAAGACGAAACATTAAGGACCATGGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATCAACAGTCTCTCTGAAGGCCATCGACCAATCAACAGTCTCTTTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAACAAACAGTTTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCAACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAGTAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAAAAAACAGACTCTCTGGAGGCCATTGACCAATAAACAGTCTCTCCTTAGGCCATCGACCAATAAACAGTCTCTCTGGAGGCCATCGACCAATAAACAGTCTCTCTGTAGGCCATCGACCAATAAACAGTCTGTCTGGAGGCCATCGACCCGTAACAGTCTCTCTAGCCAGGGAGGCTCGCTGTCGTAACACTTCTCAAGCCTCTTCTGGGAAACACCTGGTCCAGCCCAATGATTCACCCACATAAACAAGGTCCTTAGGCTTTTGTGCAAACGTGTGGTGTCCTCGTACTAATGTCTGGCACAAGTGAGTTCTGGACAGGCACTGTTGGTTCTAAAAAAAAAAGTCCTGGGCCCCATCCTTACTAGAAAATAAATGTGTTCCCCTTAAAATGAAGGATTTCATTCTGATCCTGTTGGTGTTCTCTGGGTCCAATGATGTCCTCCTGTACCTCTTCTGGGGTATCGGATAACCCTTAACCCCTGTCCTCAAAGTCTCTCCCATCACTACCCCACATGCCACTGCACCTCTAAGCCCctacagtaatacactatacagcTCTGCTACATGTAACACAATAAATTAATTCACTCCTTGAGataaatgtattatttaaatGTAAAGCCTATATTCATCCAGGTTATAGCgtgtaaaatgtttttaaaaaaaagcagAAATGTCCATAGTTCTGGTCTTGTTCCATCAGGGAGGAGGCTGGTTCTGTCATCGATCACAAATGATCATCTTCTCATCTCTTGTTCCACTCCTCCATCCCAGAGTCAATTCTTCTATCTCGTCTCTTGTTCCTCTCTgagttctctctcctccctccattccttctccGTGTGTCCATATCGGTGTGTGTGAGGAAAAAGAAGAGGCAGAGATAGAGGAGataggagagattagaggagattagaggagattagaggagatgagaggagatacgggagatagaggagataggaggagataggagatagaggagatgggggagataataggagattagaggagattagaggagataATAGGAGATAAGAGGAGATACGGGAGATAGAGGAGATAGGAGGAGATATGACCGATGTCTTCTAGCTGCACTTACAGCTCTCCACAATCATGTTGGACAACTGTTCCACctgaaacaaacaaacacaccacaccactgttagtgactacacacccacaccactgttagtgactacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacaccaacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccccaccactgttagtgactacaccccaacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacaccccaacaccactgttagtgactacacccccaccactgttagtgactacacacccacaccactgttagtgactacacccacaccactgttagtgactacaccaacaccactgttagtgactacacccaaacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactaccaacaccactgttagtgactacacccaaacaccactgttagtgactacacacccacaccactgttagtgactaccaacaccactgttagtgactacacaccacaccactgttagtgactacacacccaacaccactgttagtgactaccaacaccactgttagtgactaccaacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccccaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccacaccactgttagtgactacacacccaacaccactgttagtgactacacacccccaccactgttagtgactacacacccacaccactgttagtgactacacacccaacaccactgttagtgactacacacccccaccactgttagtgactacaccccaacaccactgttagtgactacaccccaacaccactgttagtgactacacacccacaccactgttagtgactacac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106570759

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2205929 False 2277 lncRNA 0.48 3 37870942 37877986
TU2205930 True 3500 lncRNA 0.48 2 37870942 37874563

Neighbor

gene id symbol gene type direction distance location
or112-1 LOC106613329 coding upstream 428296 37440826 ~ 37442646 (+)
LOC110503430 LOC106613330 coding upstream 438825 37431071 ~ 37432117 (+)
LOC110503254 LOC106613331 coding upstream 457269 37410129 ~ 37413673 (+)
LOC118944094 NA coding upstream 490721 37377737 ~ 37380221 (+)
LOC118944100 NA coding upstream 493733 37375591 ~ 37377209 (+)
LOC110511319 LOC106613336 coding downstream 68677 37946663 ~ 37973546 (+)
LOC118944107 NA coding downstream 98659 37976645 ~ 37979130 (+)
LOC110511668 LOC106591056 coding downstream 161877 38039863 ~ 38121778 (+)
rasgrp4 rasgrp4 coding downstream 585449 38463435 ~ 38523166 (+)
LOC110503272 NA coding downstream 648898 38526884 ~ 38527767 (+)
G1928914 NA non-coding upstream 24996 37845515 ~ 37845946 (+)
G1928905 NA non-coding upstream 54098 37816540 ~ 37816844 (+)
G1928889 NA non-coding upstream 166878 37703280 ~ 37704064 (+)
G1928868 NA non-coding upstream 189475 37662661 ~ 37681467 (+)
G1928876 NA non-coding upstream 205023 37664533 ~ 37665919 (+)
G1928962 NA non-coding downstream 103426 37981412 ~ 37981631 (+)
G1928979 NA non-coding downstream 144187 38022173 ~ 38023865 (+)
G1928994 NA non-coding downstream 186320 38064306 ~ 38064621 (+)
G1929003 NA non-coding downstream 202770 38080756 ~ 38081065 (+)
G1928851 NA other upstream 236783 37633215 ~ 37634159 (+)
G1928756 NA other upstream 406304 37445561 ~ 37464638 (+)
G1928752 NA other upstream 435501 37434903 ~ 37435441 (+)
LOC110503436 tiam1 other upstream 578526 37291589 ~ 37375534 (+)
LOC110503265 scaf4 other upstream 667756 37193636 ~ 37239498 (+)
G1929037 NA other downstream 319912 38197898 ~ 38198524 (+)
G1929196 NA other downstream 631860 38509846 ~ 38513105 (+)
ppp1r13l ppp1r13l other downstream 712195 38590146 ~ 38653011 (+)
bicra LOC106613370 other downstream 1053853 38845482 ~ 38932575 (+)

Expression


Co-expression Network