Gene
RNA
| Item | Value |
|---|---|
| gene id | G1933538 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 42419146 ~ 42419454 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Hemagglutinin/amebocyte aggregation factor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2211811 | True | 309 | lncRNA | 0.31 | 1 | 42419146 | 42419454 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110503214 | LOC106581444 | coding | downstream | 48551 | 42358000 ~ 42370595 (-) |
| LOC110490901 | LOC106613249 | coding | downstream | 203360 | 42190618 ~ 42215786 (-) |
| LOC110489559 | LOC106613248 | coding | downstream | 297309 | 42111669 ~ 42121837 (-) |
| LOC110489558 | LOC106613247 | coding | downstream | 308493 | 42090565 ~ 42170024 (-) |
| LOC118944009 | LOC106613246 | coding | downstream | 395908 | 41988723 ~ 42023238 (-) |
| aplp2 | LOC102785027 | coding | upstream | 113080 | 42532534 ~ 42673783 (-) |
| LOC118944083 | NA | coding | upstream | 799620 | 43219074 ~ 43223984 (-) |
| LOC110503290 | LOC106613395 | coding | upstream | 1014672 | 43434126 ~ 43439279 (-) |
| LOC118944046 | NA | coding | upstream | 1082847 | 43502301 ~ 43504650 (-) |
| LOC118944047 | NA | coding | upstream | 1229952 | 43649406 ~ 43650309 (-) |
| G1933537 | NA | non-coding | downstream | 3497 | 42415429 ~ 42415649 (-) |
| G1933536 | NA | non-coding | downstream | 7632 | 42411312 ~ 42411514 (-) |
| G1933535 | NA | non-coding | downstream | 7845 | 42411038 ~ 42411301 (-) |
| G1933532 | NA | non-coding | downstream | 11483 | 42407335 ~ 42407663 (-) |
| G1933531 | NA | non-coding | downstream | 17960 | 42400979 ~ 42401186 (-) |
| G1933539 | NA | non-coding | upstream | 896 | 42420350 ~ 42420568 (-) |
| G1933540 | NA | non-coding | upstream | 8968 | 42428422 ~ 42428625 (-) |
| G1933541 | NA | non-coding | upstream | 9544 | 42428998 ~ 42429312 (-) |
| G1933542 | NA | non-coding | upstream | 16264 | 42435718 ~ 42436332 (-) |
| G1933546 | NA | non-coding | upstream | 30873 | 42450327 ~ 42450746 (-) |
| G1933529 | NA | other | downstream | 18819 | 42399897 ~ 42400327 (-) |
| G1933401 | NA | other | downstream | 343207 | 42073127 ~ 42075939 (-) |
| G1932422 | NA | other | downstream | 1262413 | 41156371 ~ 41156733 (-) |
| G1931785 | NA | other | downstream | 1953279 | 40465620 ~ 40465867 (-) |
| G1934061 | NA | other | upstream | 700511 | 43119965 ~ 43153967 (-) |
| G1934102 | NA | other | upstream | 779919 | 43199373 ~ 43199815 (-) |
| G1935283 | NA | other | upstream | 1837842 | 44257296 ~ 44258661 (-) |
| G1935421 | NA | other | upstream | 2101701 | 44521155 ~ 44521439 (-) |
| G1935467 | NA | other | upstream | 2159568 | 44579022 ~ 44585392 (-) |
