Gene
RNA
| Item | Value |
|---|---|
| gene id | G1933542 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 42435718 ~ 42436332 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Hemagglutinin/amebocyte aggregation factor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2211815 | True | 615 | lncRNA | 0.34 | 1 | 42435718 | 42436332 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110503214 | LOC106581444 | coding | downstream | 65123 | 42358000 ~ 42370595 (-) |
| LOC110490901 | LOC106613249 | coding | downstream | 219932 | 42190618 ~ 42215786 (-) |
| LOC110489559 | LOC106613248 | coding | downstream | 313881 | 42111669 ~ 42121837 (-) |
| LOC110489558 | LOC106613247 | coding | downstream | 325065 | 42090565 ~ 42170024 (-) |
| LOC118944009 | LOC106613246 | coding | downstream | 412480 | 41988723 ~ 42023238 (-) |
| aplp2 | LOC102785027 | coding | upstream | 96202 | 42532534 ~ 42673783 (-) |
| LOC118944083 | NA | coding | upstream | 782742 | 43219074 ~ 43223984 (-) |
| LOC110503290 | LOC106613395 | coding | upstream | 997794 | 43434126 ~ 43439279 (-) |
| LOC118944046 | NA | coding | upstream | 1065969 | 43502301 ~ 43504650 (-) |
| LOC118944047 | NA | coding | upstream | 1213074 | 43649406 ~ 43650309 (-) |
| G1933541 | NA | non-coding | downstream | 6406 | 42428998 ~ 42429312 (-) |
| G1933540 | NA | non-coding | downstream | 7093 | 42428422 ~ 42428625 (-) |
| G1933539 | NA | non-coding | downstream | 15150 | 42420350 ~ 42420568 (-) |
| G1933538 | NA | non-coding | downstream | 16264 | 42419146 ~ 42419454 (-) |
| G1933537 | NA | non-coding | downstream | 20069 | 42415429 ~ 42415649 (-) |
| G1933546 | NA | non-coding | upstream | 13995 | 42450327 ~ 42450746 (-) |
| G1933548 | NA | non-coding | upstream | 15306 | 42451638 ~ 42451894 (-) |
| G1933551 | NA | non-coding | upstream | 19905 | 42456237 ~ 42456832 (-) |
| G1933731 | NA | non-coding | upstream | 21933 | 42458265 ~ 42459073 (-) |
| G1933733 | NA | non-coding | upstream | 24547 | 42460879 ~ 42461223 (-) |
| G1933529 | NA | other | downstream | 35391 | 42399897 ~ 42400327 (-) |
| G1933401 | NA | other | downstream | 359779 | 42073127 ~ 42075939 (-) |
| G1932422 | NA | other | downstream | 1278985 | 41156371 ~ 41156733 (-) |
| G1931785 | NA | other | downstream | 1969851 | 40465620 ~ 40465867 (-) |
| G1934061 | NA | other | upstream | 683633 | 43119965 ~ 43153967 (-) |
| G1934102 | NA | other | upstream | 763041 | 43199373 ~ 43199815 (-) |
| G1935283 | NA | other | upstream | 1820964 | 44257296 ~ 44258661 (-) |
| G1935421 | NA | other | upstream | 2084823 | 44521155 ~ 44521439 (-) |
| G1935467 | NA | other | upstream | 2142690 | 44579022 ~ 44585392 (-) |
