G1933859


Basic Information

Item Value
gene id G1933859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42771947 ~ 42779209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2212222
ggtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtgtcctcggagtgggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtggtttatgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaacccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttcttcacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaaataaatttgattgatat
>TU2212223
ggaggtctttgtgggctatactcagccttgtctcaggatggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaacccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagagagtttttcctagccaccgtgcttcttcacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2212222 False 1183 lncRNA 0.49 2 42771947 42779162
TU2212223 True 920 lncRNA 0.48 2 42777995 42779209

Neighbor

gene id symbol gene type direction distance location
aplp2 LOC102785027 coding downstream 98164 42532534 ~ 42673783 (-)
LOC110503214 LOC106581444 coding downstream 401352 42358000 ~ 42370595 (-)
LOC110490901 LOC106613249 coding downstream 556161 42190618 ~ 42215786 (-)
LOC110489559 LOC106613248 coding downstream 650110 42111669 ~ 42121837 (-)
LOC110489558 LOC106613247 coding downstream 661294 42090565 ~ 42170024 (-)
LOC118944083 NA coding upstream 439865 43219074 ~ 43223984 (-)
LOC110503290 LOC106613395 coding upstream 654917 43434126 ~ 43439279 (-)
LOC118944046 NA coding upstream 723092 43502301 ~ 43504650 (-)
LOC118944047 NA coding upstream 870197 43649406 ~ 43650309 (-)
LOC118944048 NA coding upstream 873584 43652793 ~ 43654707 (-)
G1933856 NA non-coding downstream 7636 42763540 ~ 42764311 (-)
G1933854 NA non-coding downstream 9319 42762101 ~ 42762628 (-)
G1933825 NA non-coding downstream 51798 42719945 ~ 42720149 (-)
G1933824 NA non-coding downstream 53336 42718359 ~ 42718611 (-)
G1933823 NA non-coding downstream 55178 42714342 ~ 42716769 (-)
G1933868 NA non-coding upstream 5621 42784830 ~ 42982877 (-)
G1933866 NA non-coding upstream 6786 42785995 ~ 42789355 (-)
G1933877 NA non-coding upstream 33733 42812942 ~ 42814182 (-)
G1933885 NA non-coding upstream 45408 42824617 ~ 42824924 (-)
G1933900 NA non-coding upstream 97684 42876893 ~ 42877767 (-)
G1933529 NA other downstream 371620 42399897 ~ 42400327 (-)
G1933401 NA other downstream 696008 42073127 ~ 42075939 (-)
LOC118944009 LOC106613246 other downstream 768519 41988723 ~ 42023238 (-)
G1932422 NA other downstream 1615214 41156371 ~ 41156733 (-)
G1931785 NA other downstream 2306080 40465620 ~ 40465867 (-)
G1934061 NA other upstream 340756 43119965 ~ 43153967 (-)
G1934102 NA other upstream 420164 43199373 ~ 43199815 (-)
G1935283 NA other upstream 1478087 44257296 ~ 44258661 (-)
G1935421 NA other upstream 1741946 44521155 ~ 44521439 (-)
G1935467 NA other upstream 1799813 44579022 ~ 44585392 (-)

Expression


Co-expression Network