G1934306


Basic Information

Item Value
gene id G1934306
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43469531 ~ 43471503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2212810
GGATTTCAGTGagctttattttttttaaccaaaagTGTCATTTCTGATATGAACCATCAGGACATGTCCACAACACAGAAGACATTTATTTATCATTTAAACACAGCTCCACTGAGAAACAGCCAATTCCAAAAAATTAAATGCTTTCTTTCACTTGAATTTAGTTTTGAATTTAACAAACTTCTAATCCAACTGACATCGAGTTACAAAATAAAAATGGCCAAAATTTAAGGGAACAAGTTGTCTACCCAGAACCTTGCTTGTGGATATTCTGATTGTTTAAATATCCTAAcataagaccccccccccccccgggacaCATCCATCCCACCCTGAAATAAAACTGACACATCTAGTCAGAGGGATCCGCCACGGCATCCAAATGGAATCCTACtccctacatagcgcactactAACATAgacctctggtctaaagtagtgcactatatagggaatagggtgccatttaagactTGATAAGgtctcctctccaaccctccctgaCATGCTAGTGATCTTACAAGACAACATTTCCCAACAATAGTGTACAACCCTGTCCAGAACCAATCCCTGGCTTCCTCCTAGTTGTACATCTTGACAGAACCATGTAGATTTAACGTGAAGCTCCACCCCCAAACAGCTACAGAGCTTCACTTACACCTGTTCTGTCAGACCTGCACAAGGGTAGAGGAGAGCCTGGTCCAAGAGCTGTTTCTGCCCTGGCCCTACTCATCACTCCAAAACCTCAACTCCGTAAGGAGTTGGAATGGGCAGGAACAGACTGCCAACCAGGCTAGCGCCGAGgggggtacggttaggggttGATTCTGGAGGGGGACGTGGCGTCACATCAAGGGAGGTGTTACCGATGCATCAGGGCAGCTTGTAGTAACCCTcccaccccaaaataaaaacccttgaaggagGAGACCATTTCCTGGTGTATCATATATCCAATTGAAattaatctttaaaaaaaaaaaaaaaaaagcaagatGCTCCTCGTCTCCTCCTTCAAGATGAGAAACCCCACTCCACTGGGAGGGACAGCCACAACCAATCACAGTAGAGTTATGGTAAAATGAGAGCATGTCAGAGGTTGCTTGCCAAATAGCACCCCAATtatttatgtagtgcactacattttaccagagccctatggcttgTGCACCAGGACTAGGGGACTAGGACAGATGACCTAGGGGACTAAGACAGATGGTCTAGGGGACTAGGACAGATGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGATGGGCTGTGGCTACAGCTGCCAGTGGGGCTGaaaaatacagtaaatataaaACCAGGCAGCTGCCAAAGTGCCTGTGGTTTGACCCCTGTTCTCTCATCTAGTCACGTTAAATGTGTAACGCCCTTCCCGCAGTGGCCCACCCTTTCCAATATAAACCATCCCAAAAGCTAGATGCGTTTTATTCTGGGTCTACAATAGACCAGAGAAAACAGGGGTCACAGTCCCAACCAATGAGAAAGCAGAAAGACCACAGCATGTACATTctcccaacactgtagttcaaCTTGGTACAGCTTGAATTTCTTTTTGACAACAGCATGTAGAGACACACATTTGTAGACATCCAATATTTGTCATTGgaaaagagaaacagaaagagcaTCTCACCATCTTGTTTTCAGGGATCCCCAAAGCAACATGGAACAGCTAAACACAACCTGAACAGAGGTTGATCTGGGGAAAGTTTAGAAAATACAACACCAAAAGCCATGACCGCCCCCTCCCcccctcatggccAAGAGACACCCctc
>TU2212813
GGATTTCAGTGagctttattttttttaaccaaaagTGTCATTTCTGATATGAACCATCAGGACATGTCCACAACACAGAAGACATTTATTTATCATTTAAACACAGCTCCACTGAGAAACAGCCAATTCCAAAAAATTAAATGCTTTCTTTCACTTGAATTTAGTTTTGAATTTAACAAACTTCTAATCCAACTGACATCGAGTTACAAAATAAAAATGGCCAAAATTTAAGGGAACAAGTTGTCTACCCAGAACCTTGCTTGTGGATATTCTGATTGTTTAAATATCCTAAcataagaccccccccccccccgggacaCATCCATCCCACCCTGAAATAAAACTGACACATCTAGTCAGAGGGATCCGCCACGGCATCCAAATGGAATCCTACtccctacatagcgcactactAACATAgacctctggtctaaagtagtgcactatatagggaatagggtgccatttaagactTGATAAGgtctcctctccaaccctccctgaCATGCTAGTGATCTTACAAGACAACATTTCCCAACAATAGTGTACAACCCTGTCCAGAACCAATCCCTGGCTTCCTCCTAGTTGTACATCTTGACAGAACCATGTAGATTTAACGTGAAGCTCCACCCCCAAACAGCTACAGAGCTTCACTTACACCTGTTCTGTCAGACCTGCACAAGGGTAGAGGAGAGCCTGGTCCAAGAGCTGTTTCTGCCCTGGCCCTACTCATCACTCCAAAACCTCAACTCCGTAAGGAGTTGGAATGGGCAGGAACAGACTGCCAACCAGGCTAGCGCCGAGgggggtacggttaggggttGATTCTGGAGGGGGACGTGGCGTCACATCAAGGGAGGTGTTACCGATGCATCAGGGCAGCTTGTAGTAACCCTcccaccccaaaataaaaacccttgaaggagGAGACCATTTCCTGGTGTATCATATATCCAATTGAAattaatctttaaaaaaaaaaaaaaaaaagcaagatGCTCCTCGTCTCCTCCTTCAAGATGAGAAACCCCACTCCACTGGGAGGGACAGCCACAACCAATCACAGTAGAGTTATGGTAAAATGAGAGCATGTCAGAGGTTGCTTGCCAAATAGCACCCCAATtatttatgtagtgcactacattttaccagagccctatggcttgTGCACCAGGACTAGGGGACTAGGACAGATGACCTAGGGGACTAAGACAGATGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGATGGGCTGTGGCTACAGCTGCCAGTGGGGCTGaaaaatacagtaaatataaaACCAGGCAGCTGCCAAAGTGCCTGTGGTTTGACCCCTGTTCTCTCATCTAGTCACGTTAAATGTGTAACGCCCTTCCCGCAGTGGCCCACCCTTTCCAATATAAACCATCCCAAAAGCTAGATGCGTTTTATTCTGGGTCTACAATAGACCAGAGAAAACAGGGGTCACAGTCCCAACCAATGAGAAAGCAGAAAGACCACAGCATGTACATTctcccaacactgtagttcaaCTTGGTACAGCTTGAATTTCTTTTTGACAACAGCATGTAGAGACACACATTTGTAGACATCCAATATTTGTCATTGgaaaagagaaacagaaagagcaTCTCACCATCTTGTTTTCAGGGATCCCCAAAGCAACATGGAACAGCTAAACACAACCTGAACAGAGGTTGATCTGGGGAAAGTTTAGAAAATACAACACCAAAAGCCATGACCGCCCCCTCCCAATCCCCCCCCCTCATGGCCAAGAGACACCCctcccaatccccccccccctcatggccAAGAGACACCCctc
>TU2212814
GGATTTCAGTGagctttattttttttaaccaaaagTGTCATTTCTGATATGAACCATCAGGACATGTCCACAACACAGAAGACATTTATTTATCATTTAAACACAGCTCCACTGAGAAACAGCCAATTCCAAAAAATTAAATGCTTTCTTTCACTTGAATTTAGTTTTGAATTTAACAAACTTCTAATCCAACTGACATCGAGTTACAAAATAAAAATGGCCAAAATTTAAGGGAACAAGTTGTCTACCCAGAACCTTGCTTGTGGATATTCTGATTGTTTAAATATCCTAAcataagaccccccccccccccgggacaCATCCATCCCACCCTGAAATAAAACTGACACATCTAGTCAGAGGGATCCGCCACGGCATCCAAATGGAATCCTACtccctacatagcgcactactAACATAgacctctggtctaaagtagtgcactatatagggaatagggtgccatttaagactTGATAAGgtctcctctccaaccctccctgaCATGCTAGTGATCTTACAAGACAACATTTCCCAACAATAGTGTACAACCCTGTCCAGAACCAATCCCTGGCTTCCTCCTAGTTGTACATCTTGACAGAACCATGTAGATTTAACGTGAAGCTCCACCCCCAAACAGCTACAGAGCTTCACTTACACCTGTTCTGTCAGACCTGCACAAGGGTAGAGGAGAGCCTGGTCCAAGAGCTGTTTCTGCCCTGGCCCTACTCATCACTCCAAAACCTCAACTCCGTAAGGAGTTGGAATGGGCAGGAACAGACTGCCAACCAGGCTAGCGCCGAGgggggtacggttaggggttGATTCTGGAGGGGGACGTGGCGTCACATCAAGGGAGGTGTTACCGATGCATCAGGGCAGCTTGTAGTAACCCTcccaccccaaaataaaaacccttgaaggagGAGACCATTTCCTGGTGTATCATATATCCAATTGAAattaatctttaaaaaaaaaaaaaaaaaagcaagatGCTCCTCGTCTCCTCCTTCAAGATGAGAAACCCCACTCCACTGGGAGGGACAGCCACAACCAATCACAGTAGAGTTATGGTAAAATGAGAGCATGTCAGAGGTTGCTTGCCAAATAGCACCCCAATtatttatgtagtgcactacattttaccagagccctatggcttgTGCACCAGGACTAGGGGACTAGGACAGATGACCTAGGGGACTAAGACAGATGGTCTAGGGGACTAGGACAGATGGACTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGACAGATGGACTAGGGGATGGGCTGTGGCTACAGCTGCCAGTGGGGCTGaaaaatacagtaaatataaaACCAGGCAGCTGCCAAAGTGCCTGTGGTTTGACCCCTGTTCTCTCATCTAGTCACGTTAAATGTGTAACGCCCTTCCCGCAGTGGCCCACCCTTTCCAATATAAACCATCCCAAAAGCTAGATGCGTTTTATTCTGGGTCTACAATAGACCAGAGAAAACAGGGGTCACAGTCCCAACCAATGAGAAAGCAGAAAGACCACAGCATGTACATTctcccaacactgtagttcaaCTTGGTACAGCTTGAATTTCTTTTTGACAACAGCATGTAGAGACACACATTTGTAGACATCCAATATTTGTCATTGgaaaagagaaacagaaagagcaTCTCACCATCTTGTTTTCAGGGATCCCCAAAGCAACATGGAACAGCTAAACACAACCTGAACAGAGGTTGATCTGGGGAAAGTTTAGAAAATACAACACCAAAAGCCATGACCGCCCCCTCCCAATCCCCCCCCCTCATGGCCAAGAGACACCCctcccaatccccccccccctcatggccAAGAGACACCCctc
>TU2212815
GGATTTCAGTGagctttattttttttaaccaaaagTGTCATTTCTGATATGAACCATCAGGACATGTCCACAACACAGAAGACATTTATTTATCATTTAAACACAGCTCCACTGAGAAACAGCCAATTCCAAAAAATTAAATGCTTTCTTTCACTTGAATTTAGTTTTGAATTTAACAAACTTCTAATCCAACTGACATCGAGTTACAAAATAAAAATGGCCAAAATTTAAGGGAACAAGTTGTCTACCCAGAACCTTGCTTGTGGATATTCTGATTGTTTAAATATCCTAAcataagaccccccccccccccgggacaCATCCATCCCACCCTGAAATAAAACTGACACATCTAGTCAGAGGGATCCGCCACGGCATCCAAATGGAATCCTACtccctacatagcgcactactAACATAgacctctggtctaaagtagtgcactatatagggaatagggtgccatttaagactTGATAAGgtctcctctccaaccctccctgaCATGCTAGTGATCTTACAAGACAACATTTCCCAACAATAGTGTACAACCCTGTCCAGAACCAATCCCTGGCTTCCTCCTAGTTGTACATCTTGACAGAACCATGTAGATTTAACGTGAAGCTCCACCCCCAAACAGCTACAGAGCTTCACTTACACCTGTTCTGTCAGACCTGCACAAGGGTAGAGGAGAGCCTGGTCCAAGAGCTGTTTCTGCCCTGGCCCTACTCATCACTCCAAAACCTCAACTCCGTAAGGAGTTGGAATGGGCAGGAACAGACTGCCAACCAGGCTAGCGCCGAGgggggtacggttaggggttGATTCTGGAGGGGGACGTGGCGTCACATCAAGGGAGGTGTTACCGATGCATCAGGGCAGCTTGTAGTAACCCTcccaccccaaaataaaaacccttgaaggagGAGACCATTTCCTGGTGTATCATATATCCAATTGAAattaatctttaaaaaaaaaaaaaaaaaagcaagatGCTCCTCGTCTCCTCCTTCAAGATGAGAAACCCCACTCCACTGGGAGGGACAGCCACAACCAATCACAGTAGAGTTATGGTAAAATGAGAGCATGTCAGAGGTTGCTTGCCAAATAGCACCCCAATtatttatgtagtgcactacattttaccagagccctatggcttgTGCACCAGGACTAGGGGACTAGGACAGATGACCTAGGGGACTAAGACAGATGGTCTAGGGGACTAGGACAGATGGACTAGGAGACTAGGACAGATGGACTAGGGGATGGGCTGTGGCTACAGCTGCCAGTGGGGCTGaaaaatacagtaaatataaaACCAGGCAGCTGCCAAAGTGCCTGTGGTTTGACCCCTGTTCTCTCATCTAGTCACGTTAAATGTGTAACGCCCTTCCCGCAGTGGCCCACCCTTTCCAATATAAACCATCCCAAAAGCTAGATGCGTTTTATTCTGGGTCTACAATAGACCAGAGAAAACAGGGGTCACAGTCCCAACCAATGAGAAAGCAGAAAGACCACAGCATGTACATTctcccaacactgtagttcaaCTTGGTACAGCTTGAATTTCTTTTTGACAACAGCATGTAGAGACACACATTTGTAGACATCCAATATTTGTCATTGgaaaagagaaacagaaagagcaTCTCACCATCTTGTTTTCAGGGATCCCCAAAGCAACATGGAACAGCTAAACACAACCTGAACAGAGGTTGATCTGGGGAAAGTTTAGAAAATACAACACCAAAAGCCATGACCGCCCCCTCCCAATCCCCCCCCCTCATGGCCAAGAGACACCCctcccaatccccccccccctcatggccAAGAGACACCCctc
>TU2212816
GGATTTCAGTGagctttattttttttaaccaaaagTGTCATTTCTGATATGAACCATCAGGACATGTCCACAACACAGAAGACATTTATTTATCATTTAAACACAGCTCCACTGAGAAACAGCCAATTCCAAAAAATTAAATGCTTTCTTTCACTTGAATTTAGTTTTGAATTTAACAAACTTCTAATCCAACTGACATCGAGTTACAAAATAAAAATGGCCAAAATTTAAGGGAACAAGTTGTCTACCCAGAACCTTGCTTGTGGATATTCTGATTGTTTAAATATCCTAAcataagaccccccccccccccgggacaCATCCATCCCACCCTGAAATAAAACTGACACATCTAGTCAGAGGGATCCGCCACGGCATCCAAATGGAATCCTACtccctacatagcgcactactAACATAgacctctggtctaaagtagtgcactatatagggaatagggtgccatttaagactTGATAAGgtctcctctccaaccctccctgaCATGCTAGTGATCTTACAAGACAACATTTCCCAACAATAGTGTACAACCCTGTCCAGAACCAATCCCTGGCTTCCTCCTAGTTGTACATCTTGACAGAACCATGTAGATTTAACGTGAAGCTCCACCCCCAAACAGCTACAGAGCTTCACTTACACCTGTTCTGTCAGACCTGCACAAGGGTAGAGGAGAGCCTGGTCCAAGAGCTGTTTCTGCCCTGGCCCTACTCATCACTCCAAAACCTCAACTCCGTAAGGAGTTGGAATGGGCAGGAACAGACTGCCAACCAGGCTAGCGCCGAGgggggtacggttaggggttGATTCTGGAGGGGGACGTGGCGTCACATCAAGGGAGGTGTTACCGATGCATCAGGGCAGCTTGTAGTAACCCTcccaccccaaaataaaaacccttgaaggagGAGACCATTTCCTGGTGTATCATATATCCAATTGAAattaatctttaaaaaaaaaaaaaaaaaagcaagatGCTCCTCGTCTCCTCCTTCAAGATGAGAAACCCCACTCCACTGGGAGGGACAGCCACAACCAATCACAGTAGAGTTATGGTAAAATGAGAGCATGTCAGAGGTTGCTTGCCAAATAGCACCCCAATtatttatgtagtgcactacattttaccagagccctatggcttgTGCACCAGGACTAGGGGACTAGGACAGATGACCTAGGGGACTAAGACAGATGGTCTAGGACAGATGGACTAGGGGACTAGGACAGATGGACTAGGGGATGGGCTGTGGCTACAGCTGCCAGTGGGGCTGaaaaatacagtaaatataaaACCAGGCAGCTGCCAAAGTGCCTGTGGTTTGACCCCTGTTCTCTCATCTAGTCACGTTAAATGTGTAACGCCCTTCCCGCAGTGGCCCACCCTTTCCAATATAAACCATCCCAAAAGCTAGATGCGTTTTATTCTGGGTCTACAATAGACCAGAGAAAACAGGGGTCACAGTCCCAACCAATGAGAAAGCAGAAAGACCACAGCATGTACATTctcccaacactgtagttcaaCTTGGTACAGCTTGAATTTCTTTTTGACAACAGCATGTAGAGACACACATTTGTAGACATCCAATATTTGTCATTGgaaaagagaaacagaaagagcaTCTCACCATCTTGTTTTCAGGGATCCCCAAAGCAACATGGAACAGCTAAACACAACCTGAACAGAGGTTGATCTGGGGAAAGTTTAGAAAATACAACACCAAAAGCCATGACCGCCCCCTCCCAATCCCCCCCCCTCATGGCCAAGAGACACCCctcccaatccccccccccctcatggccAAGAGACACCCctc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2212810 False 1927 lncRNA 0.46 2 43469531 43471503
TU2212813 False 1929 lncRNA 0.46 2 43469531 43471503
TU2212814 False 1877 lncRNA 0.46 2 43469531 43471503
TU2212815 False 1849 lncRNA 0.46 2 43469531 43471503
TU2212816 True 1841 lncRNA 0.46 2 43469531 43471503

Neighbor

gene id symbol gene type direction distance location
LOC110503290 LOC106613395 coding downstream 30252 43434126 ~ 43439279 (-)
LOC118944083 NA coding downstream 245547 43219074 ~ 43223984 (-)
aplp2 LOC102785027 coding downstream 795748 42532534 ~ 42673783 (-)
LOC110503214 LOC106581444 coding downstream 1098936 42358000 ~ 42370595 (-)
LOC110490901 LOC106613249 coding downstream 1253745 42190618 ~ 42215786 (-)
LOC118944046 NA coding upstream 30798 43502301 ~ 43504650 (-)
LOC118944047 NA coding upstream 177903 43649406 ~ 43650309 (-)
LOC118944048 NA coding upstream 181290 43652793 ~ 43654707 (-)
LOC118943990 nectin1 coding upstream 855285 44326788 ~ 44898432 (-)
LOC118943991 NA coding upstream 1121954 44593457 ~ 44595644 (-)
G1934333 NA non-coding downstream 5850 43462804 ~ 43463681 (-)
G1934320 NA non-coding downstream 41865 43427384 ~ 43427666 (-)
G1934299 NA non-coding downstream 77297 43390828 ~ 43392234 (-)
G1934301 NA non-coding downstream 88722 43366763 ~ 43380809 (-)
G1934267 NA non-coding downstream 165661 43300124 ~ 43303870 (-)
G1934349 NA non-coding upstream 7751 43479254 ~ 43479695 (-)
G1934356 NA non-coding upstream 21101 43492604 ~ 43493843 (-)
G1934382 NA non-coding upstream 116720 43588223 ~ 43589586 (-)
G1934384 NA non-coding upstream 119302 43590805 ~ 43591176 (-)
G1934401 NA non-coding upstream 143812 43615315 ~ 43615564 (-)
G1934102 NA other downstream 269716 43199373 ~ 43199815 (-)
G1934061 NA other downstream 315564 43119965 ~ 43153967 (-)
G1933529 NA other downstream 1069204 42399897 ~ 42400327 (-)
G1933401 NA other downstream 1393592 42073127 ~ 42075939 (-)
LOC118944009 LOC106613246 other downstream 1466103 41988723 ~ 42023238 (-)
G1935283 NA other upstream 785793 44257296 ~ 44258661 (-)
G1935421 NA other upstream 1049652 44521155 ~ 44521439 (-)
G1935467 NA other upstream 1107519 44579022 ~ 44585392 (-)
G1935978 NA other upstream 1924529 45396032 ~ 45397761 (-)

Expression


Co-expression Network