G1935051


Basic Information

Item Value
gene id G1935051
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44577478 ~ 44586078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2213714
attatagatctactgatattaactattatagatctactggtattaactagcataggtctactggtattaactagcatagatctactggtattaactagcatagatctactggtattaactagcatagatctactggtattaACTAGCACAGTTCTAccggtattaactagcataggtctactggtattaactagcacaGTTCTACCGGTATTAACTatcataggtctaccggtattaactagcatagatctaccggtattaactagcatagat
>TU2213715
ctactggtattaactagcatagatctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtatgaACTAGCACAgttctactggtattaactagcatag
>TU2213709
actggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactattatagatctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcacaGTTCTACCGGTATTAACTATCATAGgtctactggtattaactattatagatctactgatattaactattatag
>TU2213713
actggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactattatagatctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcataggtctactggtattaactagcacaGTTCTACCGGTATTAACTATCATAGGTCTATTGGTATTAACTAGCACAGTTCTACCGGTATTAACTatcataggtctactggtattaactagcacaGTTCTACCGGTATTAACTatcataggtctactggtattaactagcacaGTTCTACCGGTATTAACTatcataggtctactggtattaactagcatagatctACTGATAtttactagcataggtctactggtattaactagcatagatctaccggtattaac

Function

NR:

description
PREDICTED: RE1-silencing transcription factor A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2213714 False 273 lncRNA 0.34 3 44577478 44586078
TU2213715 False 166 lncRNA 0.37 3 44584135 44585068
TU2213709 False 380 lncRNA 0.35 2 44584425 44584852
TU2213713 True 564 lncRNA 0.36 2 44584425 44585876

Neighbor

gene id symbol gene type direction distance location
treh treh coding upstream 1085576 43472724 ~ 43491902 (+)
ddx6 ddx6 coding upstream 1112233 43440013 ~ 43465245 (+)
bcl9l LOC106613392 coding upstream 1157003 43299528 ~ 43420475 (+)
cdon LOC106613390 coding upstream 1364766 43066287 ~ 43212712 (+)
prdm10 prdm10 coding upstream 1792318 42723531 ~ 42785160 (+)
G1935031 NA non-coding upstream 32733 44544492 ~ 44544745 (+)
G1935022 NA non-coding upstream 51283 44525689 ~ 44526195 (+)
G1935019 NA non-coding upstream 67338 44509764 ~ 44510140 (+)
G1935018 NA non-coding upstream 68294 44508800 ~ 44509184 (+)
G1935017 NA non-coding upstream 69685 44507558 ~ 44507793 (+)
G1935052 NA non-coding downstream 353 44586431 ~ 44586726 (+)
G1935034 NA non-coding downstream 7379 44593457 ~ 44597077 (+)
G1935033 nectin1 non-coding downstream 12041 44598119 ~ 44603291 (+)
G1935062 NA non-coding downstream 34880 44620958 ~ 44621391 (+)
G1935072 NA non-coding downstream 50518 44636596 ~ 44637635 (+)
G1934201 NA other upstream 1142126 43433448 ~ 43435352 (+)
G1933999 NA other upstream 1418912 43158103 ~ 43158566 (+)
G1933574 NA other upstream 2042495 42531718 ~ 42534983 (+)
G1933563 st14 other upstream 2076488 42495580 ~ 42500990 (+)
G1933255 NA other upstream 2187217 42389427 ~ 42390261 (+)
G1935694 NA other downstream 514224 45100302 ~ 45103958 (+)
G1935696 NA other downstream 518054 45104132 ~ 45104500 (+)
G1935897 NA other downstream 702432 45288510 ~ 45289135 (+)
G1936028 NA other downstream 899265 45485343 ~ 45492999 (+)
G1936029 NA other downstream 899658 45485736 ~ 45487871 (+)

Expression


Co-expression Network