G1935518


Basic Information

Item Value
gene id G1935518
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44687481 ~ 44696157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2214289
CAAcgtaaacctcaccgtgtttggtaaggactagttaacacaacataaacctcaccgtgtttggtaaggaaGGACtagtaaacacaatataaacctcaccgtgtttggtaagaactagataacacaatataaacctcaccgtgtttggtaaggactagataacacaatataaacctcactgtgtttggtaaggactagttaacacaacataaacctcaccgtgtttggtaagaactagataacacaatataaacctcaccgtgtttggtaaggactagataacacaatataaacctcactgtgtttggtaaggactagttaacacaacataaacctcaccgtgtttggtaagaactagataacacaatataaacctcaccgtgtttggtaaggactagttgacacaatataaacctcaccgtgtttggtaaggactatataacacaatataaacctcaccgtgtt
>TU2214292
aatataaacctcacTGTGTTTGGTAAGAACTAGTtaacacaacataaacctcaccgtgtttggtaagaactagataacacaatataaacctcaccgtgtttggtaaggactagttaacacaacataaacctcaccgtgtttggtaaggactagttaacacaatataaacctcaccgtgtttggtaaggactagttgacacaacataaacctcaccgtatttggtaaggactagttaacacaacataaacctcactgtgtttggtaaggactagttaacacaatataaacctcaccgtgtttggtaaggactagttaacacaatataaacctcactgtgtttggtaaggactagttaacacaacataaacctca
>TU2214293
CAAcgtaaacctcaccgtgtttggtaaggactagttaacacaacataaacctcaccgtgtttggtaaggaaGGACtagtaaacacaatataaacctcaccgtgtttggtaaggactagttgacacaacataaacctcaccgtgtttggtaaggactagttaacacaacataaacctcaccgtgtttggtaagaactagataacacaatataaacctcaccgtgtttggtaagaactagttaacacaacataaacctcaccgtgtttggtaagaactagttaacacaacataaacctcaccgtgtttggtaaggactagttaacacaacataaacctcaccgtgtttggtaaggactagttaacacaatataaacctcaccgtgtttggtaaggactagttgacacaacataaacctcaccgtatttggtaaggactagttaacacaacataaacctcactgtgtttggtaaggactagttaacacaatataaacctcaccgtgtttggtaaggactagttaacacaatataaacctcactgtgtttggtaaggactagttaacacaacataaacctca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2214289 False 465 lncRNA 0.38 4 44687481 44696157
TU2214292 False 373 lncRNA 0.37 2 44689928 44692452
TU2214293 True 578 lncRNA 0.39 3 44689928 44696157

Neighbor

gene id symbol gene type direction distance location
LOC118943991 NA coding downstream 91837 44593457 ~ 44595644 (-)
LOC118944048 NA coding downstream 1032774 43652793 ~ 43654707 (-)
LOC118944047 NA coding downstream 1037172 43649406 ~ 43650309 (-)
LOC118944046 NA coding downstream 1182831 43502301 ~ 43504650 (-)
LOC110503290 LOC106613395 coding downstream 1248202 43434126 ~ 43439279 (-)
LOC110503298 yap1 coding upstream 605157 45301314 ~ 45370352 (-)
LOC118944063 NA coding upstream 637964 45334121 ~ 45336972 (-)
LOC110503441 cntn5 coding upstream 874921 45571078 ~ 45883165 (-)
G1935503 NA non-coding downstream 24279 44662457 ~ 44663202 (-)
G1935501 NA non-coding downstream 30336 44653773 ~ 44657145 (-)
G1935485 NA non-coding downstream 64825 44619980 ~ 44622656 (-)
G1935481 NA non-coding downstream 73144 44612300 ~ 44614337 (-)
G1935467 NA non-coding downstream 102089 44579022 ~ 44585392 (-)
G1935521 NA non-coding upstream 7877 44704034 ~ 44704514 (-)
G1935522 NA non-coding upstream 15596 44711753 ~ 44712400 (-)
G1935523 NA non-coding upstream 16308 44712465 ~ 44712703 (-)
G1935560 NA non-coding upstream 88583 44784740 ~ 44785814 (-)
G1935532 NA non-coding upstream 105248 44801405 ~ 44814304 (-)
G1935421 NA other downstream 166042 44521155 ~ 44521439 (-)
G1935283 NA other downstream 428820 44257296 ~ 44258661 (-)
G1934102 NA other downstream 1487666 43199373 ~ 43199815 (-)
G1934061 NA other downstream 1533514 43119965 ~ 43153967 (-)
G1935978 NA other upstream 699875 45396032 ~ 45397761 (-)

Expression


Co-expression Network