XLOC_038343


Basic Information

Item Value
gene id XLOC_038343
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NW_003336152.2
NCBI id KN149727.1
chromosome length 24871
location 14319 ~ 16355 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075659
tgctatataaataaacttgccttgcctatctagccatttttacagtgttctgCTAAATGCAAATGATCGGCTGTAATTGAATCCTTTAAAGAGCTGTACACAGAAGAAATGCACGTAGTGTTGGTGAGTTTGCTCTGTTTATTAGGGTGACTGAGTAAATTCTGATGTACAAAGTGAGTTTTAGAAAGGGTTTATAAATATGTACAGAGCATctgatcaataaatcaatcatatATGTATATGGAGGAAGGGACTCGGAACTAAAACAGGCACAAACACCTTCAATCTGGCTGTAAAACTGAGGGAACGCAaaggaaatgaaataaaaaaacactccAGATGAGCGTACATTCCTGACGTTTggctaaattaaataaacatgagaCGCACTCTCATTCAAAATCAAGATTcatagcaaatatatatatatatatatatatatatatatagagagagatttATATTCATATATGGTCTGCGTTTATAGGAAGTCTTTAAATAATCATCAGAAAATCCCCCGATGCAAACCCAGaataacacacacatttactctgTCATCAAACACAAACGGGGACTCCTCCAACTCTGTGCAATACCTCACAAAAATAAACACTCTTCAATTCAAAACTAATCCTTTTGGCATCTGAAACTGATCATGTACAATATtagaattatattattattattatccttcaCTGTGCAAAAACAGGCGGCGagtttgcacaataaataaaggAGATTCAGCAGGAAAACAGACAGAACTGAAGACAAAACACAGAAGAACAGGAGAAAGAGGAgagctcatcatcatcatcatcctgaccacacacacacacacaataacagagagagagacttcagctgtgtgtgtgtgtgtgtgtctgcagctcCACTACATGAAATTAACCACAGAGAAACATGAGCACAGAGTGATTATTATGGGATGACCTGTTCAattagtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttatgcgtgcaaacacacacactcattcactccactcacaaactctctcacacactcagaaCCACACATTTACCCCACACACatttactttctctctctctcttatatacacacacacacacacacacacactcatcccaTGTACATatagactcacacacacattttcacatacaCACTCGCTCCCGAAAGACACATTCTCTCTAATACTCGCACACATATTTGTTCACATGTTCACCAGACACACATTCTCAAACACACtccctcacatacacacactttctctctgccatacacacacacacacacacacacacacacacactctctctctctctcacacataccaCACGCAATCTCTCTTTCATacctacacacacacacacacactcatccTGCAGTCTGTGTTGTAGCACCGTGtgagtgagtgtatatgtgtgagtgtgtgtgtgtgtaagtcctGATGTGTGTGTTGATTGTCGTGCAGCAGAAGGCAGAGCGGCTCACTGAGTGTAAACCTGAAGAGCGCTAGCGGCGGACGCAAGACAACTAGCGCTAGCGGCGGCCACGAGGGCTTGAGGAATGCAGCGTACagtagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagggttGTGGTTGGTCAGCTTCACGTTGCCAGCTGCTGATTGGTCGTCTTCACGTGTCGCCAGCTGCTGATTGGTTGTCCTCTGCGTGTTTGAACATCAGGATGGAGTTGTAGATCTTGAGGGCGGGGCCGAGCTTCACACTCATTATCTTCACGATGTCGCGCTGCGTCAACAGGAGGAACGCCTTCCCATCGATTTGCTGGAAATCaaccaaatcaaatcaatcaat
>TCONS_00075660
CTGTAATTGAATCCTTTAAAGAGCTGTACACAGAAGAAATGCACGTAGTGTTGGTGAGTTTGCTCTGTTTATTAGGGTGACTGAGTAAATTCTGATGTACAAAGTGAGTTTTAGAAAGGGTTTATAAATATGTACAGAGCATctgatcaataaatcaatcatatATGTATATGGAGGAAGGGACTCGGAACTAAAACAGGCACAAACACCTTCAATCTGGCTGTAAAACTGAGGGAACGCAaaggaaatgaaataaaaaaacactccAGATGAGCGTACATTCCTGACGTTTggctaaattaaataaacatgagaCGCACTCTCATTCAAAATCAAGATTcatagcaaatatatatatatatatatatatatatatatagagagagatttATATTCATATATGGTCTGCGTTTATAGGAAGTCTTTAAATAATCATCAGAAAATCCCCCGATGCAAACCCAGaataacacacacatttactctgTCATCAAACACAAACGGGGACTCCTCCAACTCTGTGCAATACCTCACAAAAATAAACACTCTTCAATTCAAAACTAATCCTTTTGGCATCTGAAACTGATCATGTACAATATtagaattatattattattattatccttcaCTGTGCAAAAACAGGCGGCGagtttgcacaataaataaaggAGATTCAGCAGGAAAACAGACAGAACTGAAGACAAAACACAGAAGAACAGGAGAAAGAGGAgagctcatcatcatcatcatcctgaccacacacacacacacaataacagagagagagacttcagctgtgtgtgtgtgtgtgtgtctgcagctcCACTACATGAAATTAACCACAGAGAAACATGAGCACAGAGTGATTATTATGGGATGACCTGTTCAattagtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttatgcgtgcaaacacacacactcattcactccactcacaaactctctcacacactcagaaCCACACATTTACCCCACACACatttactttctctctctctcttatatacacacacacacacactcatcccaTGTACATatagactcacacacacattttcacatacaCACTCGCTCCCGAAAGACACATTCTCTCTAATACTCGCACACATATTTGTTCACATGTTCACCAGACACACATTCTCAAACACACtccctcacatacacacactttctctctgccatacacacacacacacacacacacacacacacactctctctctctctcacacataccaCACGCAATCTCTCTTTCATacctacacacacacgcacacacacacgcacacacacacgcacacacacgcacacgcgcacacacacacacacacagacacacactcatccTGCAGTCTGTGTTGTAGCACCGTGtgagtgagtgtatatgtgtgagtgtgtgtgtgtgtaagtcctGATGTGTGTGTTGATTGTCGTGCAGCAGAAGGCAGAGCGGCTCACTGAGTGTAAACCTGAAGAGCGCTAGCGGCGGACGCAAGACAACTAGCGCTAGCGGCGGCCACGAGGGCTTGAGGAATGCAGCGTACagtagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagggttGTGGTTGGTCAGCTTCACGTTGCCAGCTGCTGATTGGTCGTCTTCACGTGTCGCCAGCTGCTGATTGGTTGTCCTCTGCGTGTTTGAACATCAGGATGGAGTTGTAGATCTTGAGGGCGGGGCCGAGCTTCACACTCATTATCTTCACGATGTCGCGCTGCGTCAACAGGAGGAACGCCTTCCCATCGATTTGCTGGAAATCaaccaaatcaaatcaatcaat
>TCONS_00075661
GGTGAGTTTGCTCTGTTTATTAGGGTGACTGAGTAAATTCTGATGTACAAAGTGAGTTTTAGAAAGGGTTTATAAATATGTACAGAGCATctgatcaataaatcaatcatatATGTATATGGAGGAAGGGACTCGGAACTAAAACAGGCACAAACACCTTCAATCTGGCTGTAAAACTGAGGGAACGCAaaggaaatgaaataaaaaaacactccAGATGAGCGTACATTCCTGACGTTTggctaaattaaataaacATGAGCACAGAGTGATTATTATGGGATGACCTGTTCAattagtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttatgcgtgcaaacacacacactcattcactccactcacaaactctctcacacactcagaaCCACACATTTACCCCACACACatttactttctctctctctcttatatacacacacacattttcacatacaCACTCGCTCCCGAAAGACACATTCTCTCTAATACTCGCACACATATTTGTTCACATGTTCACCAGACACACATTCTCAAACACACtccctcacatacacacactttctctctgccatacacacacacacacacacacacacacacacactctctctctctctcacacataccaCACGCAATCTCTCTTTCATacctacacacacacgcacacacacacgcacacacacacgcacacacacgcacacgcgcacacacacacacacacagacacacactcatccTGCAGTCTGTGTTGTAGCACCGTGtgagtgagtgtatatgtgtgagtgtgtgtgtgtgtaagtcctGATGTGTGTGTTGATTGTCGTGCAGCAGAAGGCAGAGCGGCTCACTGAGTGTAAACCTGAAGAGCGCTAGCGGCGGACGCAAGACAACTAGCGCTAGCGGCGGCCACGAGGGCTTGAGGAATGCAGCGTACagtagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagggttGTGGTTGGTCAGCTTCACGTTGCCAGCTGCTGATTGGTCGTCTTCACGTGTCGCCAGCTGCTGATTGGTTGTCCTCTGCGTGTTTGAACATCAGGATGGAGTTGTAGATCTTGAGGGCGGGGCCGAGCTTCACACTCATTATCTTCACGATGTCGCGCTGCGTCAACAGGAGGAACGCCTTCCCATCGATTTGCTGGAAATCaaccaaatcaaatcaatcaat
>TCONS_00075662
cttcaCTGTGCAAAAACAGGCGGCGagtttgcacaataaataaaggAGATTCAGCAGGAAAACAGACAGAACTGAAGACAAAACACAGAAGAACAGGAGAAAGAGGAgagctcatcatcatcatcatcctgaccacacacacacacacaataacagagagagagacttcagctgtgtgtgtgtgtgtgtgtctgcagctcCACTACATGAAATTAACCACAGAGAAACATGAGCACAGAGTGATTATTATGGGATGACCTGTTCAattagtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttatgcgtgcaaacacacacactcattcactccactcacaaactctctcacacactcagaaCCACACATTTACCCCACACACatttactttctctctctctcttatatacacacacacattttcacatacaCACTCGCTCCCGAAAGACACATTCTCTCTAATACTCGCACACATATTTGTTCACATGTTCACCAGACACACATTCTCAAACACACtccctcacatacacacactttctctctgccatacacacacacacacacacacacacacacacactctctctctctctcacacataccaCACGCAATCTCTCTTTCATacctacacacacacacacacactcatccTGCAGTCTGTGTTGTAGCACCGTGtgagtgagtgtatatgtgtgagtgtgtgtgtgtgtaagtcctGATGTGTGTGTTGATTGTCGTGCAGCAGAAGGCAGAGCGGCTCACTGAGTGTAAACCTGAAGAGCGCTAGCGGCGGACGCAAGACAACTAGCGCTAGCGGCGGCCACGAGGGCTTGAGGAATGCAGCGTACagtagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagggttGTGGTTGGTCAGCTTCACGTTGCCAGCTGCTGATTGGTCGTCTTCACGTGTCGCCAGCTGCTGATTGGTTGTCCTCTGCGTGTTTGAACATCAGGATGGAGTTGTAGATCTTGAGGGCGGGGCCGAGCTTCACACTCATTATCTTCACGATGTCGCGCTGCGTCAACAGGAGGAACGCCTTCCCATCGATTTGCTGGAAATCaaccaaatcaaatcaatcaat
>TCONS_00075663
tgtgtctgcagctcCACTACATGAAATTAACCACAGAGAAACATGAGCACAGAGTGATTATTATGGGATGACCTGTTCAattagtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttatgcgtgcaaacacacacactcattcactccactcacaaactctctcacacactcagaaCCACACacacacacacactcatcccaTGTACATatagactcacacacacattttcacatacaCACTCGCTCCCGAAAGACACATTCTCTCTAATACTCGCACACATATTTGTTCACATGTTCACCAGACACACATTCTCAAACACACtccctcacatacacacactttctctctgccatacacacacacacacacacacacacacacacactctctctctctctcacacataccaCACGCAATCTCTCTTTCATacctacacacacacacacacactcatccTGCAGTCTGTGTTGTAGCACCGTGtgagtgagtgtatatgtgtgagtgtgtgtgtgtgtaagtcctGATGTGTGTGTTGATTGTCGTGCAGCAGAAGGCAGAGCGGCTCACTGAGTGTAAACCTGAAGAGCGCTAGCGGCGGACGCAAGACAACTAGCGCTAGCGGCGGCCACGAGGGCTTGAGGAATGCAGCGTACagtagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagggttGTGGTTGGTCAGCTTCACGTTGCCAGCTGCTGATTGGTCGTCTTCACGTGTCGCCAGCTGCTGATTGGTTGTCCTCTGCGTGTTTGAACATCAGGATGGAGTTGTAGATCTTGAGGGCGGGGCCGAGCTTCACACTCATTATCTTCACGATGTCGCGCTGCGTCAACAGGAGGAACGCCTTCCCATCGATTTGCTGGAAATCaaccaaatcaaatcaatcaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075659 False 1927 lncRNA 0.42 3 14319 16355
TCONS_00075660 False 1911 lncRNA 0.43 2 14389 16355
TCONS_00075661 False 1283 lncRNA 0.46 3 14441 16355
TCONS_00075662 False 1192 lncRNA 0.47 3 15009 16355
TCONS_00075663 True 998 lncRNA 0.48 3 15195 16355

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010868 NA coding CM030133.1 CM030133.1 2959275 ~ 2971015 (-)